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cl function » l function (Expand Search), cell function (Expand Search), cep function (Expand Search)
algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
python function » protein function (Expand Search)
algorithm wave » algorithm based (Expand Search), algorithm where (Expand Search), algorithm a (Expand Search)
wave functions » wave function (Expand Search), rate function (Expand Search)
algorithm cl » algorithm co (Expand Search), algorithm _ (Expand Search), algorithm b (Expand Search)
cl function » l function (Expand Search), cell function (Expand Search), cep function (Expand Search)
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Python code for a rule-based NLP model for mapping circular economy indicators to SDGs
Published 2025“…The package includes:</p><ul><li>The complete Python codebase implementing the classification algorithm</li><li>A detailed manual outlining model features, requirements, and usage instructions</li><li>Sample input CSV files and corresponding processed output files to demonstrate functionality</li><li>Keyword dictionaries for all 17 SDGs, distinguishing strong and weak matches</li></ul><p dir="ltr">These materials enable full reproducibility of the study, facilitate adaptation for related research, and offer transparency in the methodological framework.…”
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Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics
Published 2021“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”
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Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics
Published 2021“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”
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Circadian phase waves supported by mouse SCNs and their phase disintegration in the presence of TTX.
Published 2022“…<p>(a) A 2D circadian phase map. The SCN circadian waves propagate typically from the shell (DM region) to the core (VL region) (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010213#pcbi.1010213.s007" target="_blank">S1 Movie</a>): The direction of each white arrowhead depicts the average instantaneous direction of phase wave propagation. …”