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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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Results of the application of different clustering algorithms to average functional connectivity from healthy subjects.
Published 2023“…<p>A) Resulting cluster inertia from applying the k-means algorithm described in the methods to empirical averaged functional connectivity from healthy subjects, with different numbers of clusters. …”
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Comparison with the BST algorithm for the AF and CST bundles.
Published 2025Subjects: “…Cell Biology…”
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Immune microenvironment (A) Comparison of immune cell infiltration between the high-risk and low-risk groups using the ssGSEA algorithm.
Published 2025“…<p>(B) Comparison of immune function between the high-risk and low-risk groups using the ssGSEA algorithm. …”
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Core genes were selected through PPI analysis based on three algorithms.
Published 2024“…<p>Among 46 DEGs whose expression significantly changed in A549 and BEAS-2B cell lines, the core genes were selected using three algorithms: MCC, MNC, and DEGREE. …”
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Dice score for various <i>α</i> values (from the Eq 8) for the tracking of the CST and for the iFOD and PTT algorithms.
Published 2025Subjects: “…Cell Biology…”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”