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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
python function » protein function (Expand Search)
algorithm from » algorithm flow (Expand Search)
from function » from functional (Expand Search), fc function (Expand Search)
algorithm pca » algorithm a (Expand Search), algorithm cl (Expand Search), algorithm co (Expand Search)
pca function » gpcr function (Expand Search), a function (Expand Search), fc function (Expand Search)
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861
Swarm intelligence algorithms for width and length on influence games
Published 2021“…<br><br><div>usage: Main.py [-h] [-a] [-r] [-d D] [-t T] [-i I] [-q Q] [--shape SHAPE] [--sym] [--folder FOLDER] [--seed SEED] [--sum SUM] [--mh MH] [--tagsfile TAGSFILE] [--notags] [--prune] [--excludenodes EXCLUDENODES]<br><br>Calculates the best Influence Spread set on a Weighted Symmetric Graph using PSO<br></div><div><br></div><div><div>positional arguments:</div><div> file</div><div><br></div><div>optional arguments:</div><div> -h, --help: show this help message and exit</div><div> -a: threat file input contents as an Adjacency Matrix</div><div> -r: reverse order of nodes, from (a,b,w) a -> b will be b -> a</div><div> -d D: line separator to use while parsing</div><div> -t T: number of times to execute</div><div> -i I: number of metaheuristic iterations per execution</div><div> -q Q: fixed quota, use 0 = floor(n/2)+1</div><div> --shape SHAPE: shape functions for binarization - list of implemented shape functions: s2,s2_neg,v2,v4</div><div> --sym: consider graph as symmetric instead of directed</div><div> --folder FOLDER: output folder</div><div> --seed SEED: use custom seed for metaheuristic calcs</div><div> --sum SUM: adds a value to all node labels</div><div> --mh MH: metaheuristic to use - list of implemented metaheuristics: {1: 'Swarm', 2: 'Swarm2', 3: 'Swarm_W', 4:</div><div> 'Swarm_L'}</div><div> --tagsfile TAGSFILE: use first row as node tags instead of using plurality criteria</div><div> --notags: do not use first row as node tags - tags will be calculated</div><div> --prune: nodes with outdegree = 0 and indegree > 0, and with outdegree = 1 and neighbor's outdegree > 0 will be excluded</div><div> --excludenodes EXCLUDENODES: nodes to skip, comma separated</div></div>…”
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Surface Effect of Small Nanocrystals on the Accuracy of Structural Parameters Obtained by Pair Distribution Function Analysis
Published 2025“…The effect of the nanocrystal surface on the accuracy of average lattice parameters, crystal sizes, and mean square atom displacements (MSDs) obtained from pair distribution function (PDF) analysis of powder X-ray diffraction is investigated. …”
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865
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MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins
Published 2025“…We show that we can drastically reduce the number of parameters necessary to determine the full, analytical Boltzmann partition function of the charge landscape at both global and site-specific levels. …”
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Results from starting the inference algorithms from the true partition 10 times for 10 network instances for each <i>k</i><sub>out</sub> = 0, 0.5, …, 16.
Published 2019“…Because PAH is not designed to start from a given partition, it is not included, too.</p>…”
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Copula Modeling of Serially Correlated Multivariate Data with Hidden Structures
Published 2023“…We tackle the latter using a theoretically-justified variation of the EM algorithm developed within the framework of inference functions for margins. …”
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Tapping on the Black Box: How Is the Scoring Power of a Machine-Learning Scoring Function Dependent on the Training Set?
Published 2020“…Model scoring functions were derived with these machine-learning algorithms on various training sets selected from over 3700 protein–ligand complexes in the PDBbind refined set (version 2016). …”