Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. حسب Francisco Páscoa dos Santos (16510676)

"…Hierarchical clustering was computed using the scikit learn module in Python. C) Dendrogram of averaged functional connectivity from healthy subjects. …"

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results حسب Se-Hee Jo (20554623)

"…A major challenge in bioprocess simulation is the lack of physical and chemical property databases for biochemicals. A Python-based algorithm was developed for estimating the nonrandom two-liquid (NRTL) model parameters of aqueous binary systems in a straightforward manner from simplified molecular-input line-entry specification (SMILES) strings of substances in a system. …"

Python-based Monte Carlo Simulation Tool حسب Yangfan Jiang (9372782)

Cost functions implemented in Neuroptimus. حسب Máté Mohácsi (20469514)

Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements حسب Pascal Wang (10130612)

"…</div><div><br></div><div>The `TAMS` folder contains the necessary files to run the TAMS algorithm. The `main.py` file is the file to be executed using a command of the type `python main.py`. …"

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data حسب Anthony S. Barente (14035175)

"…Here we describe pyAscore, an efficient and versatile implementation of the Ascore algorithm in Python for scoring the localization of user defined PTMs in data dependent mass spectrometry. pyAscore can be used from the command line or imported into Python scripts and accepts standard file formats from popular software tools used in bottom-up proteomics. …"

Contrast enhancement of digital images using dragonfly algorithm حسب Soumyajit Saha (19726163)

"…The article deals with contrast enhancement as an optimization problem and uses the Dragonfly Algorithm (DA) to find the optimal grey-level intensity values. …"

S1 File - حسب Yuh-Chin T. Huang (17867207)

"…In this study, we developed a computerized algorithm using the python package (pdfplumber) and validated against clinicians’ interpretation. …"

S1 Dataset - حسب Yuh-Chin T. Huang (17867207)

"…In this study, we developed a computerized algorithm using the python package (pdfplumber) and validated against clinicians’ interpretation. …"

Dataset of networks used in assessing the Troika algorithm for clique partitioning and community detection حسب Samin Aref (4683934)

"…Each network is provided in .gml format or .pkl format which can be read into a networkX graph object using standard functions from the networkX library in Python. …"

ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “<i>N</i>” Dimensional Sub-Hilbert Space حسب Koushik Naskar (7510592)

"…The “ADT” program can be efficiently used to (a) formulate analytic functional forms of differential equations for ADT angles and diabatic potential energy matrix and (b) solve the set of coupled differential equations numerically to evaluate ADT angles, residue due to singularity­(ies), ADT matrices, and finally, diabatic potential energy surfaces (PESs). …"

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data حسب Jean-Christophe Lachance (6619307)

"…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …"

Data_Sheet_1_Decoding emotional resilience in aging: unveiling the interplay between daily functioning and emotional health.PDF حسب Minhua Guo (18392646)

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics حسب Paolo Cifani (1575613)

"…SAMPEI is implemented as a Python package and is available open-source from BioConda and GitHub (https://github.com/FenyoLab/SAMPEI).…"

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics حسب Paolo Cifani (1575613)

"…SAMPEI is implemented as a Python package and is available open-source from BioConda and GitHub (https://github.com/FenyoLab/SAMPEI).…"

Search-based testing (Genetic Algorithm) - Chapter 11 of the book "Software Testing Automation" حسب Saeed Parsa (13893726)

"…</p> <p><br></p> <p>3. Algorithm</p> <p>Below is the main body of the test data generator program:</p> <p>  </p> <p>the main body of a Python program to generate test data for Python functions.…"

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. حسب Kevin Sawade (16726527)

"…However, our algorithm was 1000 times faster than pyROSETTA (both algorithms have been parallelized on a per-structure basis using the Python package joblib [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010531#pcbi.1010531.ref069" target="_blank">69</a>]).…"

A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... حسب Hector Torres (11708207)

The results of ICA performed using PyNoetic. حسب Gursimran Singh (575288)

"…For advanced users, it facilitates the seamless integration of custom functionalities and novel algorithms with minimal coding, ensuring adaptability at each design stage. …"

Multidomain, Automated Photopatterning of DNA-functionalized Hydrogels (MAPDH). حسب Moshe Rubanov (7289156)