Design example using the structure of the LecB lectin <i>Pseudomonas aeruginosa</i> strain PA14 (PDB ID: 5A6Y [67]) and the osprey workflow for fries/<i>EWAK</i>*. by Anna U. Lowegard (8051597)

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PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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Comparing the computational <i>EWAK</i>* ranking with the experimental ranking for 41 c-Raf-RBD variants binding to KRas. by Anna U. Lowegard (8051597)

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<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

Surface accessibility of native and mutant proteins. by Ishtiaque Ahammad (10522854)

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Data_Sheet_1_Parallel Implementation of Large-Scale Linear Scaling Density Functional Theory Calculations With Numerical Atomic Orbitals in HONPAS.PDF by Zhaolong Luo (9692087)

Subjects: “…Medical Biochemistry: Proteins and Peptides (incl. Medical Proteomics)…”

Frequency of binding site usage as a function of binding site length. by Virgile Andreani (17087764)

Subjects: “…unlike approximation algorithms…”

Data_Sheet_1_Modified Particle Swarm Optimization Algorithms for the Generation of Stable Structures of Carbon Clusters, Cn (n = 3–6, 10).doc by Gourhari Jana (4015469)

Subjects: “…Medical Biochemistry: Proteins and Peptides (incl. Medical Proteomics)…”

Table_1_Delayed Comparison and Apriori Algorithm (DCAA): A Tool for Discovering Protein–Protein Interactions From Time-Series Phosphoproteomic Data.XLSX by Lianhong Ding (9753227)

“…<p>Analysis of high-throughput omics data is one of the most important approaches for obtaining information regarding interactions between proteins/genes. …”

Computational predictions in the protein-protein interface of the c-Raf-RBD:KRas complex for c-Raf-RBD(RK) and the novel variant c-Raf-RBD(RKY). by Anna U. Lowegard (8051597)

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PATH⁺ correctly predicted a weaker binding affinity for HIV-1 protease with the drug-resistant G48V mutation (right, experimental kcal/mol, PDB ID: 3cyw [81]) bound to d... by Yuxi Long (11024307)

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Table1_Multiobjective optimization algorithm for accurate MADYMO reconstruction of vehicle-pedestrian accidents.DOCX by Donghua Zou (290402)

Unsupervised Machine Learning Organization of the Functional Dark Proteome of Gram-Negative “Superbugs”: Six Protein Clusters Amenable for Distinct Scientific Applications by Carlos Sicilia (14228509)

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Comparison of algorithms in two cases. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

Flow of the NSGA-II algorithm. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

^aTwo HIV-1 protease mutants bound to inhibitor darunavir (G48V: PDB ID 3cyw [81] & L90M: PDB ID 2f81 [82]). by Yuxi Long (11024307)

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An average number of beta turns in a loop (isolated GGG included in the loops) as a function of loop length. by Maxim Shapovalov (365188)

Fig 1 - by Dillion M. Fox (4043159)

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Conserved domains of <i>MeASLBD</i> proteins. by Yiming Mao (6059345)

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Dark protein space in terms of statistics. by Tian Cai (4227052)

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