Significantly dysregulated proteins (|log2FC | ≤  0.5, adj. p-value ≤  0.05) in SCA1 (805 proteins). by Aimilia-Christina Vagiona (17584758)

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Visualization by PaCMAP [52] shows that persistence fingerprint clusters protein-ligand complexes with similar binding affinity reasonably well, even beyond the training dataset (P... by Yuxi Long (11024307)

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Fig 1 - by Tian Cai (4227052)

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Supplementary Tables 1 - 7 from A Meta-analysis of Lung Cancer Gene Expression Identifies <i>PTK7</i> as a Survival Gene in Lung Adenocarcinoma by Ron Chen (14910750)

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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements by Pascal Wang (10130612)

“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... by Ziyan Jin (21021976)

NLDock: a Fast Nucleic Acid–Ligand Docking Algorithm for Modeling RNA/DNA–Ligand Complexes by Yuyu Feng (11371729)

“…However, although a number of docking algorithms have been developed for protein–ligand interactions, only a few docking programs were presented for nucleic acid–ligand interactions. …”

Uneven stoichiometry as a consequence of internal symmetry. by Spencer E. Bliven (6672755)

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Hot dog fold duplication. by Spencer E. Bliven (6672755)

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PathogenProteinFunctionalPredictionPSB2020 Poster by Jason McDermott (413669)

“…Prediction of protein function from sequence is possible because of evolutionary relationships between proteins with similar functions, and existing algorithms can identify the corresponding sequence similarity. …”

Profile of dysregulated proteins in SCA1 cells containing polyQ inclusions. by Aimilia-Christina Vagiona (17584758)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... by Yuxi Long (11024307)

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The workflow used to analyze imbalanced and balanced sequences. by Solomon Shiferaw Beyene (9143178)

Performances of Naïve Bayes (NB), Multilayer Perceptron (MLP), Random Forest (RF), Gradient Boosting (GB), Support Vector Machine (SVM) and K- Nearest Neighbors (KNN). by Solomon Shiferaw Beyene (9143178)

Accuracy, sensitivity, specificity and F-score. by Solomon Shiferaw Beyene (9143178)

The figures showed a comparison of the balanced and imbalanced sequences and performance of classifiers. by Solomon Shiferaw Beyene (9143178)

Performance of the Algorithm 1. by Bogumił Kamiński (7827794)

Table_1_Genetic Algorithms for Optimized Diagnosis of Alzheimer’s Disease and Frontotemporal Dementia Using Fluorodeoxyglucose Positron Emission Tomography Imaging.DOCX by Josefa Díaz-Álvarez (5572427)

Antigens displaying geographically conserved balancing selection at functionally important interfaces. Antigens were not normalised based on their sizes. by Myo T. Naung (10873278)

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Functional enrichment of protein subnetworks in HIV-1 producer cells after co-culture with uninfected cells. by James W. Bruce (10204626)