Explained variance ration of the PCA algorithm. by Abeer Aljohani (18497914)

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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Data pre-processing and identification of DEGs. by Ziyang Liu (242055)

Subjects:

Hist-8000 sequence similarity scores are closer to the ground truth than the corresponding Sum-of-learnt-Trigrams scores. (NW, Hist-8000) and (NW, Hist-SDM12) are both higher than... by Frixos Papadopoulos (22001664)

PyNoetic’s pre-processing module, which supports filtering and artifact removal, including ICA. by Gursimran Singh (575288)

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Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

Average function evaluation times of the three optimization algorithms. by Shuhui Yu (1535500)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

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The benchmark functions. by Shuhui Yu (1535500)

Reward function related parameters. by Honglei Pang (22693724)

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The algorithm is designed to identify patterns in the treatment dataset. by Belén Otero-Carrasco (21262360)

Supplemental Tables S1 and S2 for Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks by Diana Murray (16859046)

“…Biological insights derived from the subnetworks, including the annotation of proteins of unknown function, are discussed in detail. …”

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. by Jose Cleydson F. Silva (8685594)

Isologs, function and residue information of 12 key proteins in MPV replication. by Huaichuan Duan (6458477)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

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Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

HIV exposure risk algorithm. HIV exposure risk algorithm based on available data from the Tonse Padmozi trial. by Anna M. Leone (22486372)

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)