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Explained variance ration of the PCA algorithm.
Published 2025“…These classification algorithms often requires conversion of a medical data to another space in which the original data is reduced to important values or moments. …”
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2
Contrast enhancement of digital images using dragonfly algorithm
Published 2024“…The article deals with contrast enhancement as an optimization problem and uses the Dragonfly Algorithm (DA) to find the optimal grey-level intensity values. …”
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GridScopeRodents: High-Resolution Global Typical Rodents Distribution Projections from 2021 to 2100 under Diverse SSP-RCP Scenarios
Published 2025“…</p><p dir="ltr">All data are stored in GeoTIFF (.tif) format and can be accessed and processed using ArcGIS, ENVI, R, and Python. Each GeoTIFF file contains grid-based predictions of habitat suitability, with values ranging from 0 to 1. …”
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<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043)
Published 2025“…<p dir="ltr">This dataset contains the data used in the article <a href="https://academic.oup.com/aob/advance-article/doi/10.1093/aob/mcaf043/8074229" rel="noreferrer" target="_blank">"Machine Learning and digital Imaging for Spatiotemporal Monitoring of Stress Dynamics in the clonal plant Carpobrotus edulis: Uncovering a Functional Mosaic</a>", which includes the complete set of collected leaf images, image features (predictors) and response variables used to train machine learning regression algorithms.…”
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6
Code
Published 2025“…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”
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Core data
Published 2025“…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”
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Mechanomics Code - JVT
Published 2025“…At the beginning of the code, there is a help section that explains how to use it.<br></li><li>Python (written by Syed Shafat Ali and tested by Yan Ge): analogous functions of the MATLAB folder. …”
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Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100)
Published 2025“…The corrected bias functions were then applied to adjust the years (2020–2100) of daily rainfall data using the "ibicus" package, an open-source Python tool for bias adjustment and climate model evaluation. …”
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<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b>
Published 2025“…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>perception_module/output_data/glasgow_perception.nc</code> - Perception scores from Step 2</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python cluster_module/cluster_perceptions.py<br></pre></pre><p dir="ltr"><b>Output:</b></p><ul><li><code>cluster_module/output_data/clusters.shp</code> - Shapefile of neighbourhood boundaries</li></ul><h2>Quick Test</h2><p dir="ltr">To test the clustering module with demo data:</p><pre><pre>python cluster_module/cluster_perceptions.py<br></pre></pre><p dir="ltr">This uses the pre-computed embeddings from <code>perception_module/pred_output/20250626_*_embedding_efficientnet.nc</code>.…”
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MCCN Case Study 2 - Spatial projection via modelled data
Published 2025“…</p><h4><b>Case Study 2 - Spatial projection via modelled data</b></h4><h4><b>Description</b></h4><p dir="ltr">Estimate soil pH and electrical conductivity at 45 cm depth across a farm based on values collected from soil samples. This study demonstrates: 1) Description of spatial assets using STAC, 2) Loading heterogeneous data sources into a cube, 3) Spatial projection in xarray using different algorithms offered by the <a href="https://pypi.org/project/PyKrige/" rel="nofollow" target="_blank">pykrige</a> and <a href="https://pypi.org/project/rioxarray/" rel="nofollow" target="_blank">rioxarray</a> packages.…”
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An Ecological Benchmark of Photo Editing Software: A Comparative Analysis of Local vs. Cloud Workflows
Published 2025“…Performance Profiling Algorithms Energy Measurement Methodology # Pseudo-algorithmic representation of measurement protocol def capture_energy_metrics(workflow_type: WorkflowEnum, asset_vector: List[PhotoAsset]) -> EnergyProfile: baseline_power = sample_idle_power_draw(duration=30) with PowerMonitoringContext() as pmc: start_timestamp = rdtsc() # Read time-stamp counter if workflow_type == WorkflowEnum.LOCAL: result = execute_local_pipeline(asset_vector) elif workflow_type == WorkflowEnum.CLOUD: result = execute_cloud_pipeline(asset_vector) end_timestamp = rdtsc() energy_profile = EnergyProfile( duration=cycles_to_seconds(end_timestamp - start_timestamp), peak_power=pmc.get_peak_consumption(), average_power=pmc.get_mean_consumption(), total_energy=integrate_power_curve(pmc.get_power_trace()) ) return energy_profile Statistical Analysis Framework Our analytical pipeline employs advanced statistical methodologies including: Variance Decomposition: ANOVA with nested factors for hardware configuration effects Regression Analysis: Generalized Linear Models (GLM) with log-link functions for energy modeling Temporal Analysis: Fourier transform-based frequency domain analysis of power consumption patterns Cluster Analysis: K-means clustering with Euclidean distance metrics for workflow classification Data Validation and Quality Assurance Measurement Uncertainty Quantification All energy measurements incorporate systematic and random error propagation analysis: Instrument Precision: ±0.1W for CPU power, ±0.5W for GPU power Temporal Resolution: 1ms sampling with Nyquist frequency considerations Calibration Protocol: NIST-traceable power standards with periodic recalibration Environmental Controls: Temperature-compensated measurements in climate-controlled facility Outlier Detection Algorithms Statistical outliers are identified using the Interquartile Range (IQR) method with Tukey's fence criteria (Q₁ - 1.5×IQR, Q₃ + 1.5×IQR). …”