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within function » fibrin function (Expand Search), python function (Expand Search), protein function (Expand Search)
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Route for bays29 output by ABSQL algorithm.
Published 2023“…DSRABSQL builds upon the Q-learning (QL) algorithm. Considering its problems of slow convergence and low accuracy, four strategies within the QL framework are designed first: the weighting function-based reward matrix, the power function-based initial Q-table, a self-adaptive <i>ε-beam</i> search strategy, and a new Q-value update formula. …”
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Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy
Published 2021“…Here, we propose a new physics-based scoring function that includes both enthalpic and entropic contributions upon binding by considering the conformational variability of the flexible side chains within the ensemble of docked poses. …”
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Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy
Published 2021“…Here, we propose a new physics-based scoring function that includes both enthalpic and entropic contributions upon binding by considering the conformational variability of the flexible side chains within the ensemble of docked poses. …”
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Algorithmic assessment reveals functional implications of GABRD gene variants linked to idiopathic generalized epilepsy
Published 2024“…<p>The primary objective of this study is to address the challenge posed by the increasing number of variants of unknown clinical significance (VUS) within the GABRD gene, which encodes the δ subunit of γ-Aminobutyric acid type A receptors. …”
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Comparative analysis of algorithms.
Published 2024“…At the heart of this paradigm lies the pivotal role of edge servers, which are entrusted with critical computing and storage functions. …”
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Posterior for parameter <i>θ</i> of the uniform toy model for different weights in the ABC distance function.
Published 2020“…In (b), is shown the Hellinger distance from the prior to approximate posterior distribution, which is maximized directly within Algorithm 2. In (c), the Hellinger distance from the approximate posterior to the exact posterior distribution (as sampled via MCMC) is displayed. …”
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Core genes were selected through PPI analysis based on three algorithms.
Published 2024“…<p>Among 46 DEGs whose expression significantly changed in A549 and BEAS-2B cell lines, the core genes were selected using three algorithms: MCC, MNC, and DEGREE. <b>(A)</b> The top 10 genes were prioritized using MCC analysis, which identifies the largest clique within the PPI network and selects the central proteins within the clique. …”
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Multimodal reference functions.
Published 2025“…For the early-stage diabetes dataset, LGWO-BP achieved an accuracy of 0.92, a recall of 0.93, a precision of 0.88, an F1-score of 0.91, and an AUC of 0.95. Utilizing the diabetes dataset from 130 U.S. hospitals, the LGWO-BP algorithm achieved a precision rate of 0.97, a sensitivity of 1.00, a correct classification rate of 0.99, a harmonic mean of precision and recall (F1-score) of 0.98, and an area under the ROC curve (AUC) of 1.00. …”
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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