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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
algorithms cell » algorithms real (Expand Search), algorithms less (Expand Search), algorithm cl (Expand Search)
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algorithm b » algorithm _ (Expand Search), algorithms _ (Expand Search)
b function » _ function (Expand Search), a function (Expand Search), 1 function (Expand Search)
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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Functional enrichment analysis of 24 differentially expressed aging-related genes.
Published 2023Subjects: -
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BOFdat Step 3: Identifying species-specific metabolic end goals.
Published 2019“…<p>(A) After Step 3, the entire weight of the cell is accounted for by BOFdat. (B) Schematic description of the effect of adding a biomass precursor on the prediction of gene essentiality in the model. …”
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Differential analysis between the high- and low-risk score groups and functional analyses of DEGs.
Published 2024Subjects: -
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Cooperativity and nonlinear amplification of synaptic input in cell type specific models.
Published 2022Subjects: -
170
Distinct responses of thorny and a-thorny cells to clustered dendritic inputs.
Published 2022Subjects: -
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit
Published 2025“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”