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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
algorithms hamc » algorithms a (Expand Search), algorithms based (Expand Search), algorithms among (Expand Search)
python function » protein function (Expand Search)
hamc function » hand function (Expand Search), heart function (Expand Search), womac function (Expand Search)
algorithm npc » algorithm etc (Expand Search), algorithm pca (Expand Search), algorithm _ (Expand Search)
npc function » spc function (Expand Search), gpcr function (Expand Search), fc function (Expand Search)
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Python code for a rule-based NLP model for mapping circular economy indicators to SDGs
Published 2025“…The package includes:</p><ul><li>The complete Python codebase implementing the classification algorithm</li><li>A detailed manual outlining model features, requirements, and usage instructions</li><li>Sample input CSV files and corresponding processed output files to demonstrate functionality</li><li>Keyword dictionaries for all 17 SDGs, distinguishing strong and weak matches</li></ul><p dir="ltr">These materials enable full reproducibility of the study, facilitate adaptation for related research, and offer transparency in the methodological framework.…”
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Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics
Published 2021“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”
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Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics
Published 2021“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”
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Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
Published 2019“…This program implements the “modeling by satisfaction of spatial restraints” strategy and its core algorithm has not been altered significantly since the early 1990s. …”
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EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches
Published 2019“…<div><p>T-DNA activation-tagging technology is widely used to study rice gene functions. When T-DNA inserts into genome, the flanking gene expression may be altered using CaMV 35S enhancer, but the affected genes still need to be validated by biological experiment. …”
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Python code, input data, and outputs of Fourier analysis and Dynamic Time Warping from McGlasson et al.
Published 2024“…</p> <h4><strong>Python Function Files:</strong></h4> <p>radarfuncs.py: Holds three functions used for FFT and DTW analysis.…”