Gene content overlap in <i>RNF43 G659fs</i> mutation-specific pathways. حسب Alexis M. Thornton (11068403)

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... حسب Ziyan Jin (21021976)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data حسب Jean-Christophe Lachance (6619307)

"…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …"

BOFdat Step 3: Identifying species-specific metabolic end goals. حسب Jean-Christophe Lachance (6619307)

Example of a typical workflow to construct a network using NeKo. حسب Marco Ruscone (11747264)

Antibody challenge outcomes. حسب Andrea Blasco (7439102)

Bespoke software controls the sorter GUI and reports on instrument status to the user. حسب Diane M. Wiener (1956583)

LBQANA python code + Merged Gene Expression Dataset from GSE10810, GSE17907, GSE20711, GSE42568, GSE45827, and GSE61304 for Breast Cancer Biomarker Discovery حسب M RN (9866504)

MOMA compared to MFA-derived estimates, carbon yield efficiencies and CBA co-factor profile comparison across unconstrained, manually curated and experimentally constrained solutio... حسب Laura de Arroyo Garcia (9226096)

"…MFA ranges were extracted from a pre-existing dataset (Long et al., 2019), using a Python algorithm to select the minimal and maximal flux ranges.…"

Code حسب Baoqiang Chen (21099509)

"…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …"

Core data حسب Baoqiang Chen (21099509)

"…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …"

Mechanomics Code - JVT حسب Carlo Vittorio Cannistraci (5854046)

"…At the beginning of the code, there is a help section that explains how to use it.<br></li><li>Python (written by Syed Shafat Ali and tested by Yan Ge): analogous functions of the MATLAB folder. …"

Expression vs genomics for predicting dependencies حسب Broad DepMap (5514062)

"…Columns:</p><p dir="ltr">model: Specifies the collection of features used (Expression, Mutation, Exp+CN, etc)</p><p dir="ltr">gene: The perturbation (column in Target.hdf5) examined. …"