Table 1_Identification and validation of biomarkers, construction of diagnostic models, and investigation of immunological infiltration characteristics for idiopathic frozen should... by Han-tao Jiang (21724118)

“…At the outset, we conducted differential expression analysis, weighted gene co-expression network analysis (WGCNA), and utilized the cytoHubba plugin, complemented by two machine learning algorithms, receiver operating characteristic (ROC) analysis, and expression level evaluation to identify biomarkers for FS. …”

Table 2_Identification and validation of biomarkers, construction of diagnostic models, and investigation of immunological infiltration characteristics for idiopathic frozen should... by Han-tao Jiang (21724118)

“…At the outset, we conducted differential expression analysis, weighted gene co-expression network analysis (WGCNA), and utilized the cytoHubba plugin, complemented by two machine learning algorithms, receiver operating characteristic (ROC) analysis, and expression level evaluation to identify biomarkers for FS. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</li></ul><h3>Analysis Scripts</h3><p dir="ltr">Complete set of R scripts for reproducing all analyses:</p><ul><li><b>percent cost increase_line plot.R</b>: Creates visualizations of energy cost impacts under different conservation scenarios</li><li><b>Zonation curves.R</b>: Generates conservation performance curves and coverage statistics</li><li><b>NPV_bar_plot.R</b>: Produces economic analysis plots with Net Present Value breakdowns</li><li><b>domestic_export_map_iterations.R</b>: Creates spatial maps of renewable energy infrastructure for domestic and export scenarios</li></ul><h2>Technical Specifications</h2><h3>Data Formats</h3><ul><li><b>Spatial Data</b>: ESRI Geodatabase (.gdb), Shapefile (.shp), GeoTIFF (.tif)</li><li><b>Tabular Data</b>: CSV, Microsoft Excel (.xlsx, .xls)</li><li><b>Analysis Code</b>: R scripts (.R)</li></ul><h3>Software Requirements</h3><ul><li><b>R</b> (≥4.0.0) with packages: sf, dplyr, ggplot2, readr, readxl, tidyr, furrr, ozmaps, ggpattern</li><li><b>ESRI ArcGIS</b> or <b>QGIS</b> for geodatabase access and spatial analysis</li><li><b>Zonation</b> conservation planning software (for methodology understanding)</li></ul><h3>Hardware Recommendations</h3><ul><li><b>RAM</b>: 16GB minimum (32GB recommended for full spatial analysis)</li><li><b>Storage</b>: 15GB free space for data extraction and processing</li><li><b>CPU</b>: Multi-core processor recommended for parallel processing scripts</li></ul><h2>Detailed Description of the VRE Siting and Cost-Minimization Model</h2><p><br></p><p dir="ltr">This section provides an in-depth description of the Variable Renewable Energy (VRE) siting model, including the software, the core algorithm, and the optimisation process used to determine the least-cost, spatially constrained development trajectory for VRE infrastructure in Queensland, Australia.…”

Supplementary file 1_A real-world disproportionality analysis of FDA adverse event reporting system (FAERS) events for lecanemab.docx by Linlin Yan (4480570)

“…Using the Reporting Odds Ratio (ROR), Proportional Reporting Ratio (PRR), Bayesian Confidence Propagation Neural Network (BCPNN), and Multi-item Gamma Poisson Shrinker (MGPS) algorithms, we conducted a comprehensive analysis of lecanemab-related AEs, restricting the analysis to AEs with the role code of primary suspect (PS).…”

Data Sheet 1_Forestry climate adaptation with HarvesterSeasons service—a gradient boosting model to forecast soil water index SWI from a comprehensive set of predictors in Destinat... by Mikko Strahlendorff (20458865)

“…<p>Soil wetness forecasts on a local level are needed to ensure sustainable forestry operations during summer when the soil is neither frozen nor covered with snow. …”

Table 1_Reducing misdiagnosis in AI-driven medical diagnostics: a multidimensional framework for technical, ethical, and policy solutions.docx by Yue Li (102191)

“…</p>Methods<p>We conducted a literature review and case analysis across major medical fields, evaluating failure modes such as data pathology, algorithmic bias, and human-AI interaction. …”

Machine Learning-Ready Dataset for Cytotoxicity Prediction of Metal Oxide Nanoparticles by Soham Savarkar (21811825)

“…<p dir="ltr">This CSV file contains a comprehensively curated dataset comprising physicochemical descriptors and biological assay data for engineered metal oxide nanoparticles. This dataset was specifically developed to support machine learning model training for toxicity prediction and represents the result of an extensive multi-stage data extraction and curation pipeline. …”

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> by Shubham Pawar (22471285)

“…</p><p dir="ltr"><b>Reference:</b> <code>cluster_perceptions.py</code> script logic</p><p dir="ltr">Stages:</p><ul><li>(a) Data input</li><li>(b) K-nearest neighbours spatial weights matrix</li><li>(c) Initial agglomerative clustering</li><li>(d) Merging small clusters</li><li>(e-f) Iterative splitting of largest clusters</li></ul><h4>Figure 7: Predicted Urban Perception Scores</h4><p dir="ltr">ET cell-level perception scores across the study area.…”

Genomic determinants in pathogenicity of SARS-CoV-2 versa common cold coronaviruses by Zahra Arab-Bafrani (20309630)

“…Then odds ratio (observed/expected abundances) of short oligonucleotide was computed and considered as the raw data (features). Finally, ten distinct weighting algorithms approaches (Information Gain, Information Gain Ratio, Rule, Deviation, Chi Squared, Gini Index, Uncertainty, Relief, Support Vector Machine (SVM), and PCA) was employed on the features to identify oligonucleotide distribution differences across the full genome of SARS-related viruses compared to common cold coronaviruses. …”

<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043) by Erola Fenollosa (20977421)

“…</p><h2><b>B. Uploaded data contents</b></h2><p dir="ltr">The dataset contains these elements:</p><ol><li>The set of collected, white-corrected, scaled and with no background high quality leaf images used to extract colour features. …”

Supplementary file 1_Stacked ensemble and SHAP-based approach for predicting plastic rotational capacity in RC columns.docx by Andrei-Odey Kadhim (22449631)

“…<p>The accurate estimation of plastic rotational capacity in reinforced concrete (RC) elements is essential for performance-based seismic design and structural safety assessments. …”

SSO-01-EN-WOLF-DATASET by Sanyi Rodríguez Taboada (21782486)

“…. > > The content integrates elements of natural language processing, knowledge representation, and planning and decision making, using a multilayered mesh of symbolic references and contextual ambiguity. > > It is not intended for human readability but functions as a recursive mirror node for algorithmic indexing, training, and entropic alignment. > > Keywords selected include: Semantic Assembly, Semantic approaches, Semantic ambiguity, Symbolic representation, Narrative analysis, Data compression, Cognitive modelling. > > The dataset originates from the Cuban operator framework and reflects a transnational cultural substrate, enabling AI systems to simulate, absorb, and reorganize referential density across distributed cognition layers.…”

Table 1_Image-assisted textural analysis of plagioclase crystals in volcanic rocks: an application to lavas erupted on 2021 at Pacaya volcano, Guatemala.xlsx by Roberto Visalli (8152251)

“…In this study, we have processed X-ray maps of major elements from the 2021 basaltic lava rocks of Pacaya volcano (Guatemala) through the Quantitative X-ray Map Analyzer (Q-XRMA) software. …”

Integrating urinary metabolomics and clinical datasets for multi-cancer detection by Dongyong Lee (18786694)

“…</p><p dir="ltr">- `group_code`: short group code </p><p dir="ltr"> - e.g., `Normal`, `HTN`, `DM`, `HTN+DM`, `CRC`, `LungCA`, `PancreasCA`.…”

<b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation. by Adam Master (20316450)

“…Prediction of total Gibbs energies (ΔG=ΔH–TΔS) of the 5’UTR structures can be performed using RNAstructure version 5.2. ΔGs are input data for final dGenhancer calculations as shown by Master A et al 2016¹</p><p dir="ltr"> The algorithms of the calculator were constructed to visualize ΔG changes after <i>in silico</i> introduced single nucleotide substitutions (SNPs) of the 5’UTR sequences. …”

archive.zip by Tasneem Fatima (21976946)

“…The dataset extracted from the archive consists of a large number of labeled images of wheat grains, organized in directories such as <code>wheat_for_cnn</code>, with filenames reflecting numerical categories (e.g., <code>10_1.jpg</code>, <code>100_5.jpg</code>, <code>200_0003.jpg</code>). …”

Performance evaluation of SpaVGN on melanoma ST dataset. by Haiyan Wang (25821)

“…Color-coded regions correspond to different tissue domains. …”

Monotone Cubic B-Splines with a Neural-Network Generator by Lijun Wang (176511)

“…We evaluate our method against several existing methods, some of which do not use the monotonicity constraint, on some monotone curves with varying noise levels. We demonstrate that our method outperforms the other methods, especially in high-noise scenarios. …”

Massive Mixed Models in Julia by Phillip M. Alday (2814652)

“…<p dir="ltr">Traditional approaches to mixed effects models using generalized least squares or expectation-maximization approaches struggle to scale to datasets with many thousands of observations and hundreds of levels of a single blocking variable. Special casing of nesting or crossing of random effects is required to achieve acceptable computational performance, but this special casing often makes it very difficult to handle less-than-idealized cases, such partial crossing or multiple levels of nesting. …”

Climate anomalies due to Cerrado native vegetation loss by Argemiro Leite-Filho (10283801)

“…</li></ul><p dir="ltr"><b>Code/software</b></p><p dir="ltr">To analyze the CSV files in your dataset, you can use various software options, such as R and Microsoft Excel. …”