Additional file 1 of The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice حسب Yiyong Zhao (21466062)

"…This table delineates the results of gene expression clustering using the MFUZZ algorithm for three super-hybrid rice varieties, namely LYP9, Y900, and XLY900, along with their progenitor strains. …"

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis حسب Alan Glanz (22109698)

"…</p><h3><b>2. </b><code><strong>GenosophusV2.txt</strong></code></h3><h3><b>2. …"

Figure 1 from PD-1 Blockade Mitigates Surgery-Induced Immunosuppression and Increases the Efficacy of Photodynamic Therapy for Pleural Mesothelioma حسب Gwendolyn M. Cramer (16964052)

"…<b>D,</b> In the AB12 mouse mesothelioma TI model, IL-1Ra protein levels are higher at 4 hours after TI (<i>n</i> = 7) compared with samples of untreated TC (<i>n</i> = 6, Mann–Whitney test <i>P</i> = 0.001).…"

Genomic determinants in pathogenicity of SARS-CoV-2 versa common cold coronaviruses حسب Zahra Arab-Bafrani (20309630)

"…These remarkable oligonucleotides might point toward the existence of some particular RNA elements that might be involved in viral virulence and thus can be targeted for viral treatment in the future.…"

<b>Optimizing Task Scheduling and Containers in Cloud Data Centers</b> حسب Arash GhorbanniaDelavar (22563696)

"…Overall, TPMCD provides a scalable and cost-efficient framework that enhances both <b>performance and sustainability</b> in cloud data centers.</p><p dir="ltr"><code>Original article DOI: https://doi.org/10.1016/j.jnca.2025.104132</code></p>…"

Supplementary file 1_Predicting first-time anaphylaxis in the elderly using stacked machine learning and population registers.docx حسب Toni Mora (8145624)

"…Key predictors included healthcare utilisation patterns, age, socioeconomic proxy (copayment level), and specific diagnostic codes related to allergic conditions.…"

CSPP instance حسب peixiang wang (19499344)

"…</li><li>Containers are randomly assigned to different attribute groups (<code>attr_group_no</code>).</li></ul></li><li><b>Yard Location Assignment</b>:</li><li><ul><li>The script systematically assigns each container a specific location in the simulated yard, including <code>area_no</code>, <code>area_bay</code>, <code>area_row</code>, and <code>area_level</code>.…"

VIIDA and InViDe: computational approaches for generating and evaluating inclusive image paragraphs for the visually impaired حسب Daniel L. Fernandes (20416673)

"…<p>Existing image description methods when used as Assistive Technologies often fall short in meeting the needs of blind or low vision (BLV) individuals. …"

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 حسب Andrew Rogers (17623239)

"…</li></ul><h3>Analysis Scripts</h3><p dir="ltr">Complete set of R scripts for reproducing all analyses:</p><ul><li><b>percent cost increase_line plot.R</b>: Creates visualizations of energy cost impacts under different conservation scenarios</li><li><b>Zonation curves.R</b>: Generates conservation performance curves and coverage statistics</li><li><b>NPV_bar_plot.R</b>: Produces economic analysis plots with Net Present Value breakdowns</li><li><b>domestic_export_map_iterations.R</b>: Creates spatial maps of renewable energy infrastructure for domestic and export scenarios</li></ul><h2>Technical Specifications</h2><h3>Data Formats</h3><ul><li><b>Spatial Data</b>: ESRI Geodatabase (.gdb), Shapefile (.shp), GeoTIFF (.tif)</li><li><b>Tabular Data</b>: CSV, Microsoft Excel (.xlsx, .xls)</li><li><b>Analysis Code</b>: R scripts (.R)</li></ul><h3>Software Requirements</h3><ul><li><b>R</b> (≥4.0.0) with packages: sf, dplyr, ggplot2, readr, readxl, tidyr, furrr, ozmaps, ggpattern</li><li><b>ESRI ArcGIS</b> or <b>QGIS</b> for geodatabase access and spatial analysis</li><li><b>Zonation</b> conservation planning software (for methodology understanding)</li></ul><h3>Hardware Recommendations</h3><ul><li><b>RAM</b>: 16GB minimum (32GB recommended for full spatial analysis)</li><li><b>Storage</b>: 15GB free space for data extraction and processing</li><li><b>CPU</b>: Multi-core processor recommended for parallel processing scripts</li></ul><h2>Detailed Description of the VRE Siting and Cost-Minimization Model</h2><p><br></p><p dir="ltr">This section provides an in-depth description of the Variable Renewable Energy (VRE) siting model, including the software, the core algorithm, and the optimisation process used to determine the least-cost, spatially constrained development trajectory for VRE infrastructure in Queensland, Australia.…"

16S rRNA sequencing raw data from a thermophilic trickle bed reactor for biogas upgrading حسب Getachew Birhanu Abera (20402390)

"…The DNA extraction followed by method adapted from Jensen et al. (2023), utilizing the DNeasy 96 PowerSoil Pro QIAcube HT Kit. …"

Supplementary file 1_A real-world disproportionality analysis of FDA adverse event reporting system (FAERS) events for lecanemab.docx حسب Linlin Yan (4480570)

"…Using the Reporting Odds Ratio (ROR), Proportional Reporting Ratio (PRR), Bayesian Confidence Propagation Neural Network (BCPNN), and Multi-item Gamma Poisson Shrinker (MGPS) algorithms, we conducted a comprehensive analysis of lecanemab-related AEs, restricting the analysis to AEs with the role code of primary suspect (PS).…"

Data Sheet 1_Forestry climate adaptation with HarvesterSeasons service—a gradient boosting model to forecast soil water index SWI from a comprehensive set of predictors in Destinat... حسب Mikko Strahlendorff (20458865)

"…<p>Soil wetness forecasts on a local level are needed to ensure sustainable forestry operations during summer when the soil is neither frozen nor covered with snow. …"

<b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation. حسب Adam Master (20316450)

"…<br> An excel-based calculator - dGenhancer can be used to search for putative 5’UTR cis-acting elements, which functional activity could be determined by Gibbs energy-dependent secondary structure formation. …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…</p><p dir="ltr"><b>Reference:</b> <code>cluster_perceptions.py</code> script logic</p><p dir="ltr">Stages:</p><ul><li>(a) Data input</li><li>(b) K-nearest neighbours spatial weights matrix</li><li>(c) Initial agglomerative clustering</li><li>(d) Merging small clusters</li><li>(e-f) Iterative splitting of largest clusters</li></ul><h4>Figure 7: Predicted Urban Perception Scores</h4><p dir="ltr">ET cell-level perception scores across the study area.…"

Integrating urinary metabolomics and clinical datasets for multi-cancer detection حسب Dongyong Lee (18786694)

"…</p><p dir="ltr">- `group_code`: short group code </p><p dir="ltr"> - e.g., `Normal`, `HTN`, `DM`, `HTN+DM`, `CRC`, `LungCA`, `PancreasCA`.…"

archive.zip حسب Tasneem Fatima (21976946)

"…The dataset extracted from the archive consists of a large number of labeled images of wheat grains, organized in directories such as <code>wheat_for_cnn</code>, with filenames reflecting numerical categories (e.g., <code>10_1.jpg</code>, <code>100_5.jpg</code>, <code>200_0003.jpg</code>). …"

Machine vision system for quantification of aortic and pulmonic valvuloplasty catheter compliance حسب Jiazhe Tang (17596080)

"…Upon ballon inflation, the defocused image is then refocused though passive focusing algorithms used to identify the best focal position. …"

Performance evaluation of SpaVGN on melanoma ST dataset. حسب Haiyan Wang (25821)

"…Color-coded regions correspond to different tissue domains. …"

Monotone Cubic B-Splines with a Neural-Network Generator حسب Lijun Wang (176511)

"…We evaluate our method against several existing methods, some of which do not use the monotonicity constraint, on some monotone curves with varying noise levels. We demonstrate that our method outperforms the other methods, especially in high-noise scenarios. …"

Massive Mixed Models in Julia حسب Phillip M. Alday (2814652)

"…<p dir="ltr">Traditional approaches to mixed effects models using generalized least squares or expectation-maximization approaches struggle to scale to datasets with many thousands of observations and hundreds of levels of a single blocking variable. Special casing of nesting or crossing of random effects is required to achieve acceptable computational performance, but this special casing often makes it very difficult to handle less-than-idealized cases, such partial crossing or multiple levels of nesting. …"