ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion by Willy Wriggers (818584)

“…ModeHunter is a modular Python software package for the simulation of 3D biophysical motion across spatial resolution scales using modal analysis of elastic networks. …”

ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion by Willy Wriggers (818584)

“…ModeHunter is a modular Python software package for the simulation of 3D biophysical motion across spatial resolution scales using modal analysis of elastic networks. …”

ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion by Willy Wriggers (818584)

“…ModeHunter is a modular Python software package for the simulation of 3D biophysical motion across spatial resolution scales using modal analysis of elastic networks. …”

ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion by Willy Wriggers (818584)

“…ModeHunter is a modular Python software package for the simulation of 3D biophysical motion across spatial resolution scales using modal analysis of elastic networks. …”

Time required to import and arrange organ surface datasets and MPR images from TCIA in Blender. by Takashi Kimura (178058)

Outline of the research. by Takashi Kimura (178058)

“…This system allows medical experts to manually refine the automatically extracted data, making it more accurate and closer to the ideal dataset. First, Python programming is used to automatically generate and save JPEG-format image data from DICOM data for display in Blender. …”

Application of augmented reality to the creation of surgical simulators. by Takashi Kimura (178058)

Construction of a comprehensive organ surface dataset in Blender. by Takashi Kimura (178058)

Steps involved in docking [28]. by Kassim Folorunsho Adebambo (22806479)

“…In this research, an in silico study was conducted to explore this enzyme as a potential target for drug repurposing. A Python program was used to mine and extract data from the CHEMBL database, which yielded 53 potential GSK-3β inhibitors. …”

Lock and key theory [34]. by Kassim Folorunsho Adebambo (22806479)

“…In this research, an in silico study was conducted to explore this enzyme as a potential target for drug repurposing. A Python program was used to mine and extract data from the CHEMBL database, which yielded 53 potential GSK-3β inhibitors. …”

Generation of MPR images in JPEG format from DICOM data. by Takashi Kimura (178058)

List of Abbreviations by Gursimran Singh (575288)

“…However, existing BCI frameworks face several limitations, including a lack of stage-wise flexibility essential for experimental research, steep learning curves for researchers without programming expertise, elevated costs due to reliance on proprietary software, and a lack of all-inclusive features leading to the use of multiple external tools affecting research outcomes. …”

Datasets from the Programmatic Analysis of Fuel Treatments: from the landscape to the national level Joint Fire Science Project (14-5-01-1) by Douglas B. Rideout (19657906)

“…In addition, supplemental files such as the ArcPy python script for calculating the time since last fire and a file summarizing the wind and fuel moisture parameters used in the FlamMap runs for generating fire behavior inputs are also included.…”

Raw datasets acquired to investigate the possible roles of CAHS proteins from tardigrade in osmotic stress tolerance in mammalian cells and their analysis program by Takahiro Bino (8898745)

“…</p> <p><br></p> <p>In order to utilize the Python program code, it is necessary to refer to the file whose name corresponds to the respective filename.…”

Artifact for the ATVA 2025 paper "PolyQEnt: A Polynomial Quantified Entailment Solver" by Krishnendu Chatterjee (15367413)

Poster: Evaluating outcomes of embedding coding activities in an advanced (astro)physics module by Judith Croston (20780552)

“…The activities aim to make abstract ideas concrete, provide authentic experiences of advanced physics and astronomy tasks, and to further develop valuable employability skills in coding and Python.</p><p dir="ltr">This project will explore student experience with the S385 activities and will examine the relationship between Python engagement, use of supporting resources, performance on Python assessment tasks, and overall module performance, so as to assess whether the aims of the embedded Python activities have been achieved.…”

Replication package for Automated Extract Method Refactoring with Open-Source LLMs by Sivajeet Chand (21786839)

High-Throughput Mass Spectral Library Searching of Small Molecules in R with NIST MSPepSearch by Andrey Samokhin (20282728)

“…High-level programming languages such as Python and R are widely used in mass spectrometry data processing, where library searching is a standard step. …”

Investigating the far-right online: Using text data to understand online subcultures by L Brace (18374691)

“…While these analytical techniques are new, they are actually fairly easy for social researchers to implement due to the nature of contemporary high-level programming languages such as Python.…”

Mushroom Classification Using Support Vector Machines (SVM) Focusing on Cap Features. by Gabriel Minato (22462099)

“…The predictor variables were</p><p dir="ltr">20 pre-processed features of the mushroom cap, and the target variable was the mushroom's class</p><p dir="ltr">(edible 'e' or poisonous 'p'). The tools used were the Python programming language and its</p><p dir="ltr">libraries, primarily Scikit-learn to build and optimize the SVM classifier. …”