Model code by Waltraud Schulze (20695250)

“…The latter provides insights into the inherent texture complexity of the image data due to the lossless coding. For classification of leaf surfaces from tree species based on the computed features, we utilized the k-nearest neighbors (kNN) algorithm with k=3. …”

S1 File - by Xiaojie Feng (6873953)

PATH⁺ explains tighter binding of carbonic anhydrase II by brinzolamide. by Yuxi Long (11024307)

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An overview of PATH⁺. by Yuxi Long (11024307)

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The 10 features captured by persistence fingerprint. by Yuxi Long (11024307)

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^aTwo HIV-1 protease mutants bound to inhibitor darunavir (G48V: PDB ID 3cyw [81] & L90M: PDB ID 2f81 [82]). by Yuxi Long (11024307)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... by Yuxi Long (11024307)

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Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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PATH⁺ correctly predicted a weaker binding affinity for HIV-1 protease with the drug-resistant G48V mutation (right, experimental kcal/mol, PDB ID: 3cyw [81]) bound to d... by Yuxi Long (11024307)

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Visualization by PaCMAP [52] shows that persistence fingerprint clusters protein-ligand complexes with similar binding affinity reasonably well, even beyond the training dataset (P... by Yuxi Long (11024307)

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Performance of TNet-BP and PATH⁺ on the PDBBind v2020 refined set shows that PATH⁺ achieves similar performance with TNet-BP while having three orders fewer f... by Yuxi Long (11024307)

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Construction of internuclear persistence contours (IPCs). by Yuxi Long (11024307)

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Comparison of PATH⁺ with TNet-BP [43]. by Yuxi Long (11024307)

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Flowchart of system algorithm. by Syed Zahurul Islam (9635163)

Data Sheet 1_Strategies for population-level identification of post-acute sequelae of COVID-19 through health administrative data.pdf by Cristina Mazzali (22090328)

“…From each included study, we extracted data on design, algorithms used for outcome identification (sources, coding systems, codes, time criteria/thresholds), and whether significant associations with SARS-CoV-2 infection were reported.…”

Code snippet from “Apache Dubbo” GitHub project. by Matthew Yit Hang Yeow (20721206)

“…Our approach uses cross-project code clone detection to establish the ground truth for software reuse, identifying code clones across popular GitHub projects as indicators of potential reuse candidates. …”

Data Sheet 1_The relevance of lead prioritization: a B2B lead scoring model based on machine learning.xlsx by Laura González-Flores (20843411)

Hair removal preprocessing using the DullRazor algorithm before image generation. by Mujung Kim (22367223)

Curve of data size vs. running time. by Qingnan Ji (22662198)

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COMET: A Machine-Learning Framework Integrating Ligand-Based and Target-Based Algorithms for Elucidating Drug Targets by Haojie Wang (3072141)

“…We have developed a computational target-fishing method, termed COMET, which integrates ligand-based similarity scores with target-based binding scores into a random forest algorithm for target ranking. COMET leverages carefully curated data sets encompassing 2685 human targets of therapeutic relevance and 990,944 ligand-target interaction pairs. …”