Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 حسب Andrew Rogers (17623239)

"…</li></ul><h3>Analysis Scripts</h3><p dir="ltr">Complete set of R scripts for reproducing all analyses:</p><ul><li><b>percent cost increase_line plot.R</b>: Creates visualizations of energy cost impacts under different conservation scenarios</li><li><b>Zonation curves.R</b>: Generates conservation performance curves and coverage statistics</li><li><b>NPV_bar_plot.R</b>: Produces economic analysis plots with Net Present Value breakdowns</li><li><b>domestic_export_map_iterations.R</b>: Creates spatial maps of renewable energy infrastructure for domestic and export scenarios</li></ul><h2>Technical Specifications</h2><h3>Data Formats</h3><ul><li><b>Spatial Data</b>: ESRI Geodatabase (.gdb), Shapefile (.shp), GeoTIFF (.tif)</li><li><b>Tabular Data</b>: CSV, Microsoft Excel (.xlsx, .xls)</li><li><b>Analysis Code</b>: R scripts (.R)</li></ul><h3>Software Requirements</h3><ul><li><b>R</b> (≥4.0.0) with packages: sf, dplyr, ggplot2, readr, readxl, tidyr, furrr, ozmaps, ggpattern</li><li><b>ESRI ArcGIS</b> or <b>QGIS</b> for geodatabase access and spatial analysis</li><li><b>Zonation</b> conservation planning software (for methodology understanding)</li></ul><h3>Hardware Recommendations</h3><ul><li><b>RAM</b>: 16GB minimum (32GB recommended for full spatial analysis)</li><li><b>Storage</b>: 15GB free space for data extraction and processing</li><li><b>CPU</b>: Multi-core processor recommended for parallel processing scripts</li></ul><h2>Detailed Description of the VRE Siting and Cost-Minimization Model</h2><p><br></p><p dir="ltr">This section provides an in-depth description of the Variable Renewable Energy (VRE) siting model, including the software, the core algorithm, and the optimisation process used to determine the least-cost, spatially constrained development trajectory for VRE infrastructure in Queensland, Australia.…"

16S rRNA sequencing raw data from a thermophilic trickle bed reactor for biogas upgrading حسب Getachew Birhanu Abera (20402390)

"…The DNA extraction followed by method adapted from Jensen et al. (2023), utilizing the DNeasy 96 PowerSoil Pro QIAcube HT Kit. …"

Supplementary file 1_A real-world disproportionality analysis of FDA adverse event reporting system (FAERS) events for lecanemab.docx حسب Linlin Yan (4480570)

"…Using the Reporting Odds Ratio (ROR), Proportional Reporting Ratio (PRR), Bayesian Confidence Propagation Neural Network (BCPNN), and Multi-item Gamma Poisson Shrinker (MGPS) algorithms, we conducted a comprehensive analysis of lecanemab-related AEs, restricting the analysis to AEs with the role code of primary suspect (PS).…"

Data Sheet 1_Forestry climate adaptation with HarvesterSeasons service—a gradient boosting model to forecast soil water index SWI from a comprehensive set of predictors in Destinat... حسب Mikko Strahlendorff (20458865)

"…<p>Soil wetness forecasts on a local level are needed to ensure sustainable forestry operations during summer when the soil is neither frozen nor covered with snow. …"

<b>dGenhancer v2</b>: A software tool for designing oligonucleotides that can trigger gene-specific Enhancement of Protein Translation. حسب Adam Master (20316450)

"…<br> An excel-based calculator - dGenhancer can be used to search for putative 5’UTR cis-acting elements, which functional activity could be determined by Gibbs energy-dependent secondary structure formation. …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…</p><p dir="ltr"><b>Reference:</b> <code>cluster_perceptions.py</code> script logic</p><p dir="ltr">Stages:</p><ul><li>(a) Data input</li><li>(b) K-nearest neighbours spatial weights matrix</li><li>(c) Initial agglomerative clustering</li><li>(d) Merging small clusters</li><li>(e-f) Iterative splitting of largest clusters</li></ul><h4>Figure 7: Predicted Urban Perception Scores</h4><p dir="ltr">ET cell-level perception scores across the study area.…"

Integrating urinary metabolomics and clinical datasets for multi-cancer detection حسب Dongyong Lee (18786694)

"…</p><p dir="ltr">- `group_code`: short group code </p><p dir="ltr"> - e.g., `Normal`, `HTN`, `DM`, `HTN+DM`, `CRC`, `LungCA`, `PancreasCA`.…"

archive.zip حسب Tasneem Fatima (21976946)

"…The dataset extracted from the archive consists of a large number of labeled images of wheat grains, organized in directories such as <code>wheat_for_cnn</code>, with filenames reflecting numerical categories (e.g., <code>10_1.jpg</code>, <code>100_5.jpg</code>, <code>200_0003.jpg</code>). …"

Machine vision system for quantification of aortic and pulmonic valvuloplasty catheter compliance حسب Jiazhe Tang (17596080)

"…Upon ballon inflation, the defocused image is then refocused though passive focusing algorithms used to identify the best focal position. …"

Performance evaluation of SpaVGN on melanoma ST dataset. حسب Haiyan Wang (25821)

"…Color-coded regions correspond to different tissue domains. …"

Monotone Cubic B-Splines with a Neural-Network Generator حسب Lijun Wang (176511)

"…We evaluate our method against several existing methods, some of which do not use the monotonicity constraint, on some monotone curves with varying noise levels. We demonstrate that our method outperforms the other methods, especially in high-noise scenarios. …"

Massive Mixed Models in Julia حسب Phillip M. Alday (2814652)

"…<p dir="ltr">Traditional approaches to mixed effects models using generalized least squares or expectation-maximization approaches struggle to scale to datasets with many thousands of observations and hundreds of levels of a single blocking variable. Special casing of nesting or crossing of random effects is required to achieve acceptable computational performance, but this special casing often makes it very difficult to handle less-than-idealized cases, such partial crossing or multiple levels of nesting. …"

Table 1_Image-assisted textural analysis of plagioclase crystals in volcanic rocks: an application to lavas erupted on 2021 at Pacaya volcano, Guatemala.xlsx حسب Roberto Visalli (8152251)

"…<p>The adoption of semi-automated image processing methods to investigate geo-petrological processes has grown quickly in recent years. …"

Data Sheet 1_Image-assisted textural analysis of plagioclase crystals in volcanic rocks: an application to lavas erupted on 2021 at Pacaya volcano, Guatemala.docx حسب Roberto Visalli (8152251)

"…<p>The adoption of semi-automated image processing methods to investigate geo-petrological processes has grown quickly in recent years. …"

From GIS to HBIM and Back: Multiscale Performance and Condition Assessment for Networks of Public Heritage Buildings and Construction Components حسب Teresa Fortunato (21076099)

"…GIS-BIM data exchange routines by programming codes and algorithms are developed in Python. Dynamo “As-built” and “as-damaged” HBIM models are integrated in GIS environment multi-data seismic vulnerability assessment</p>…"

Table 1_Reducing misdiagnosis in AI-driven medical diagnostics: a multidimensional framework for technical, ethical, and policy solutions.docx حسب Yue Li (102191)

"…The main research question is how technical limitations, ethical concerns, and unclear accountability hinder safe and equitable use of AI in real-world clinical practice, and what integrated solutions can minimize errors and promote trust.</p>Methods<p>We conducted a literature review and case analysis across major medical fields, evaluating failure modes such as data pathology, algorithmic bias, and human-AI interaction. …"

Image 6_Comprehensive integration of diagnostic biomarker analysis and immune cell infiltration features in sepsis via machine learning and bioinformatics techniques.tif حسب Liuqing Yang (128705)

"…Astragalus, Salvia, and Safflower are the primary elements of Xuebijing, commonly used in the clinical treatment of sepsis. …"

Data Sheet 1_Beyond the current state of just-in-time adaptive interventions in mental health: a qualitative systematic review.pdf حسب Claire R. van Genugten (20626733)

"…To accomplish this, JITAIs often apply complex analytic techniques, such as machine learning or Bayesian algorithms to real- or near-time data acquired from smartphones and other sensors. …"

Presentation 1_Comprehensive integration of diagnostic biomarker analysis and immune cell infiltration features in sepsis via machine learning and bioinformatics techniques.pptx حسب Liuqing Yang (128705)

"…Astragalus, Salvia, and Safflower are the primary elements of Xuebijing, commonly used in the clinical treatment of sepsis. …"

Image 4_Comprehensive integration of diagnostic biomarker analysis and immune cell infiltration features in sepsis via machine learning and bioinformatics techniques.tif حسب Liuqing Yang (128705)

"…Astragalus, Salvia, and Safflower are the primary elements of Xuebijing, commonly used in the clinical treatment of sepsis. …"