Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Five Operator Lattice Simulation by James McDaniel (22522571)

“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”

Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization by Huichao Yin (14589020)

“…<p dir="ltr">Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization.…”

Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence" by Yifei Gu (9507104)

“…The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.…”

Left schematic of the XOR gate implementation [11]. by Fabricio Cravo (21387854)

PYTHON by Kan Jia (21666161)

The format of the electrode csv file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the simulation reports by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the weights file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

Example change statistic implementations. by Alex Stivala (8356257)

Subjects:

Dialogue Propositional Content Replacement (DPCR) code by Jacopo Amidei (10511297)

“…<p dir="ltr">This resource consists of a Python notebook with code that was implemented for a research project that developed a novel method for testing the components of theories of (dialogue) coherence through utterance substitution. …”

Online Resource 3: Word Cloud Dataset and Code by Jessica Zylla (17692920)

“…<p dir="ltr">Online Resource 3: Word Cloud Dataset and Code. This set of files are part of Online Resource 3, which allows readers to implement a Jupyter Notebook Python program to create a word cloud based on survey responses. …”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

Python script for binary classification with RoBERTa by Maija Ozola-Schade (20938460)

Python sript. by Kan Jia (6438599)

Numerical data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability" by Tian-Ren Jin (18781930)

“…We numerically simulate the bias of noisy probabilistic error cancellation with noisy Pauli operations and the bias of error model violation.</p><p dir="ltr">Codes are written in Python, which is contained in the folder "code". …”

Segmentation module training details. by Khelina Fedorchuk (19130089)

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”