Data features examined for potential biases. حسب Harry Hochheiser (3413396)

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Analysis topics. حسب Harry Hochheiser (3413396)

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Enhancing QSAR Predictive Power and Explainability: Meta-Modeling and SHAP Feature Importance Analysis for Drug Discovery (Python Scripts) حسب Ardo Sanjaya (18321300)

Python code to find amino acid positions with matched anchor residue motifs and probable escape variants associated with HLA-Class-I binding. حسب Nobubelo K. Ngandu (12075108)

Python code to find amino acid positions with matched anchor residue motifs and probable escape variants associated with HLA-Class-II binding. حسب Nobubelo K. Ngandu (12075108)

FlakyFix: Using Large Language Models for Predicting Flaky Test Fix Categories and Test Code Repair حسب Sakina Fatima (15362704)

"…<p dir="ltr">This is the replication package associated with the paper: 'FlakyFix: Using Large Language Models for Predicting Flaky Test Fix Categories and Test for Code Repair'</p><p><br></p><p dir="ltr">### Requirements</p><p dir="ltr">This is a list of all required python packages:</p><p dir="ltr">-imbalanced_learn==0.8.1</p><p dir="ltr">-numpy==1.19.5</p><p dir="ltr">-pandas==1.3.3</p><p dir="ltr">-transformers==4.10.2</p><p dir="ltr">-torch==1.5.0</p><p dir="ltr">-scikit_learn==0.24.2</p><p dir="ltr">-openai==v0.28.1</p><p><br></p><p dir="ltr">#Automated tool for labelling dataset with flaky test fix categories</p><p><br></p><p dir="ltr">This is a step-by-step guideline for automatically labelling dataset with flaky test fix categories</p><p><br></p><p><br></p><p dir="ltr">### Input Files:</p><p dir="ltr">This is a an input file that is required to accomplish this step:</p><p dir="ltr">* Data/IdoFT_dataset_filtered.csv</p><p dir="ltr">https://figshare.com/s/47f0fb6207ac3f9e2351</p><p><br></p><p dir="ltr">### Output Files:</p><p dir="ltr">* Results/IdoFT_dataset_filtered.csv</p><p><br></p><p><br></p><p dir="ltr">### Replicating the experiment</p><p><br></p><p dir="ltr">This experiment can be executed using the following commands after navigating to the `Code\` folder:</p><p><br></p><p dir="ltr">```console</p><p dir="ltr">bash Automated_labelling_tool.sh</p><p>```</p><p><br></p><p dir="ltr">It will generate the dataset required to run our prediction models to predict the category of the fix, given a flaky test code</p><p><br></p><p>---</p><p><br></p><p dir="ltr"># Prediction models for fix categories using the test case code</p><p><br></p><p dir="ltr">This is the guideline for replicating the experiments we used to evaluate our prediction models i.e. …"

Python script for extracting subcellular locations from a uniprot reviewed database. حسب Marlonni Maurastoni (21594544)

Dynamic Thermal Perception: Analyzing Skin Temperature Patterns Under Cyclical Heat Conditions Using Python حسب Nidhi Veerendra (21663146)

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Python-Based Algorithm for Calculating Physical Properties of Aqueous Mixtures Composed of Substances Not Available in Databases حسب Jina Lee (3138492)

"…In this study, we developed a Python-based open-source algorithm compatible with the aqueous physical property models provided in the electrolyte templates of AspenTech software. …"

Python-Based Algorithm for Calculating Physical Properties of Aqueous Mixtures Composed of Substances Not Available in Databases حسب Jina Lee (3138492)

"…In this study, we developed a Python-based open-source algorithm compatible with the aqueous physical property models provided in the electrolyte templates of AspenTech software. …"

The ROC, calibration curve and DCA of the prediction model based on MRI. حسب Jiangfa Li (18345033)

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Supplementary data for PCI-based pavement modelling: code, presentation, and additional analysis حسب Azam Amir (21505033)

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF حسب Shivani V. Pawar (20355171)

"…</p>Methods<p>Prostruc is a Python-based homology modeling tool designed to simplify protein structure prediction through an intuitive, automated pipeline. …"

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF حسب Shivani V. Pawar (20355171)

"…</p>Methods<p>Prostruc is a Python-based homology modeling tool designed to simplify protein structure prediction through an intuitive, automated pipeline. …"

Code for the HIVE Appendicitis prediction modelRepository with LLM_data_extractor_optuna for automated feature extraction حسب Anoeska Schipper (18513465)

"…</p><p dir="ltr"><b>LLM Data Extractor optuna repo</b> is a Python framework for generating and evaluating clinical text predictions using large language models (LLMs) like <code>qwen2.5</code>. …"

af3cli: Streamlining AlphaFold3 Input Preparation حسب Philipp Döpner (21028454)

"…With the release of AlphaFold3, modeling capabilities have expanded beyond protein structure prediction to embrace the inherent complexity of biomolecular systems, including nucleic acids, ions, small molecules, and their interactions. …"

The ROC, calibration curve and DCA of the predictive model based on enhanced CT. حسب Jiangfa Li (18345033)

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Study workflow diagram. حسب Alemu Birara Zemariam (17540938)

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Stunting final dataset. حسب Alemu Birara Zemariam (17540938)

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A mean SHAP value report. حسب Alemu Birara Zemariam (17540938)

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