A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

Subjects:

WheresWalker outperforms homozygosity density mapping for Maize mutant. by McKenna Feltes (11242085)

Background heterogeneity and sequencing depth improve WheresWalker SNPindex. by McKenna Feltes (11242085)

Simulation results by genetic algorithms (GAs). by Yuji Omachi (15307241)

An example of pairwise distance tables between three sites where each site has three nodes: Site₁={<i>A</i>, <i>B</i>, <i>C</i>}, Site₂={<i>a</i>, <i>b</i>, <... by Shuwen Wang (457921)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

Experiment 2D and 5D: Progressive Sample Scaling Algorithm To Solve Many-Affine BBOB Functions. by Boris Almonacid (4110337)

“…For this specific experiment<a href="https://markdownlivepreview.com/#cite_note-2" target="_blank">^[2]</a><a href="https://markdownlivepreview.com/#cite_note-3" target="_blank">^[3]</a>, the average AOCC is calculated.</p><p dir="ltr"><b>Objectives</b></p><ul><li>Solve Many-Affine BBOB Functions using a Deterministic Algorithm.…”

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”

Bulk Segregant Analysis (BSA) homozygosity mapping mirrors WheresWalker output. by McKenna Feltes (11242085)

WheresWalker identifies the correct chromosomal region for three dark yolk loci. by McKenna Feltes (11242085)

WheresWalker pipeline utilizes WGS data to identify segregating SNPs and indels. by McKenna Feltes (11242085)

If datasets are small and/or noisy, linear-regression-based algorithms for identifying functional groups outperform more complex versions. by Yuanchen Zhao (12905580)

“…Both versions are evaluated on the same synthetic datasets with a 3-group ground truth. Each algorithm return a set of coarsened <i>variables</i> (a grouping of species into three groups) and a <i>model</i> that uses these variables to predict the function. …”

The schematic view of the Radial Basis Function (RBF) algorithm. by Mohsen Yoosefzadeh-Najafabadi (6917399)

The optimal solution set of NYN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

The optimal solution set of HN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

Search Algorithms and Loss Functions for Bayesian Clustering by David B. Dahl (11761055)

Convergence curves of the voltage profile improvement by using (a) the HFPSO algorithm and (b) the PSO algorithm. by Abdullah Khan (377292)

Convergence curves of voltage stability enhancement based on (a) the HFPSO algorithm and (b) the PSO algorithm. by Abdullah Khan (377292)

SP results of algorithms in the CEC 2009 test functions. by Vahid Goodarzimehr (21343124)

MS results of algorithms in the CEC 2009 test functions. by Vahid Goodarzimehr (21343124)