Table 1_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx by Lijuan Feng (3746086)

“…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …”

Table1_Identification of key genes and immune infiltration of diabetic peripheral neuropathy in mice and humans based on bioinformatics analysis.docx by Yumin Zhang (1534168)

“…The single-sample GSEA (ssGSEA) algorithm was used to analyze the proportions of infiltrating immune cells in human DPN and the subsequent correlations with hub genes.…”

DataSheet1_Identification of key genes and immune infiltration of diabetic peripheral neuropathy in mice and humans based on bioinformatics analysis.docx by Yumin Zhang (1534168)

“…The single-sample GSEA (ssGSEA) algorithm was used to analyze the proportions of infiltrating immune cells in human DPN and the subsequent correlations with hub genes.…”

Raw data by Sophia Ohnemus (21686579)

“…<p dir="ltr">We used the Cardiac Hyperelastic Evolutionary Symbolic Regression Algorithm (CHESRA) to automatically design low-complexity cardiac strain energy functions.…”

Data Sheet 1_Differential neuropilin isoform expressions highlight plasticity in macrophages in the heterogenous TME through in-silico profiling.docx by Hyun-Jee Han (20858765)

“…Datasets were processed using established bioinformatics pipelines, including clustering algorithms, to determine cellular heterogeneity and quantify NRP isoform expression within distinct macrophage populations. …”

Data Sheet 2_Differential neuropilin isoform expressions highlight plasticity in macrophages in the heterogenous TME through in-silico profiling.docx by Hyun-Jee Han (20858765)

“…Datasets were processed using established bioinformatics pipelines, including clustering algorithms, to determine cellular heterogeneity and quantify NRP isoform expression within distinct macrophage populations. …”

Data Sheet 1_Epigenetic modifications in developmental coordination disorder: association between DNA methylation and motor performance.docx by Fangfang Huang (821089)

“…Using the Bumphunter and ProbeLasso algorithms, 48 and 22 differentially methylated regions (DMRs) were identified, respectively. …”

Data Sheet 2_Epigenetic modifications in developmental coordination disorder: association between DNA methylation and motor performance.xlsx by Fangfang Huang (821089)

“…Using the Bumphunter and ProbeLasso algorithms, 48 and 22 differentially methylated regions (DMRs) were identified, respectively. …”

Discordant Samples in Concordance Study. by Wenshu Li (762627)

“…<div><p>Homologous recombination repair (HRR) is a cellular pathway for high-fidelity double strand DNA break repair that uses the sister chromatid as a guide to ensure chromosomal integrity and cell viability. …”

One variant per line data for LoD study. by Wenshu Li (762627)

“…<div><p>Homologous recombination repair (HRR) is a cellular pathway for high-fidelity double strand DNA break repair that uses the sister chromatid as a guide to ensure chromosomal integrity and cell viability. …”

One variant per line data for precision study. by Wenshu Li (762627)

“…<div><p>Homologous recombination repair (HRR) is a cellular pathway for high-fidelity double strand DNA break repair that uses the sister chromatid as a guide to ensure chromosomal integrity and cell viability. …”

One variant per line data for concordance study. by Wenshu Li (762627)

“…<div><p>Homologous recombination repair (HRR) is a cellular pathway for high-fidelity double strand DNA break repair that uses the sister chromatid as a guide to ensure chromosomal integrity and cell viability. …”

One variant per line data for LoB study. by Wenshu Li (762627)

“…<div><p>Homologous recombination repair (HRR) is a cellular pathway for high-fidelity double strand DNA break repair that uses the sister chromatid as a guide to ensure chromosomal integrity and cell viability. …”

Table 1_Metabolic-stem cell crosstalk in PD: NK1 cells as key mediators from a bioinformatics perspective.xlsx by Junxin Zhao (16721864)

“…Our analytical workflow entailed: differential expression screening, functional enrichment, protein–protein interaction (PPI) network construction, and machine learning (ML) algorithms.…”

Data Sheet 1_Metabolic-stem cell crosstalk in PD: NK1 cells as key mediators from a bioinformatics perspective.pdf by Junxin Zhao (16721864)

“…Our analytical workflow entailed: differential expression screening, functional enrichment, protein–protein interaction (PPI) network construction, and machine learning (ML) algorithms.…”

Figure 3 from Membrane-bound Heat Shock Protein mHsp70 Is Required for Migration and Invasion of Brain Tumors by Maxim Shevtsov (15023874)

“…<b>C–E,</b> Analysis of the mass spectrometry data from isolated lipid rafts. Protein functional groups identified using the STRING database in the proteome of lipid rafts from three tumor zones (Supplementary Fig. …”

Reproducibility Scripts for TCMLncDB: TCM and lncRNA Regulation in Cancer by Hongying zhao (22697605)

“…</p><p dir="ltr">The provided code performs the following crucial steps:</p><p dir="ltr">Data Processing and QC: Scripts like prepare_tpm_expression_data.R are used for pan-cancer TPM data preparation, while tumor_purity_estimation.R calculates tumor purity using the ESTIMATE algorithm, which is essential for accurate downstream analysis.…”

Data Sheet 1_No reliable gray matter alterations in idiopathic dystonia.docx by Zhen-Yu Wang (6672833)

“…The findings suggest that using GM volume assessed by VBM as an imaging marker for ID may not be reliable. …”

Edge-disjoint spanning trees in the Möbius cube by Xiaorui Li (748417)

“…EDSTs in a network can facilitate many network functionalities such as improving the rate of data broadcasting, secure message distribution, fault-tolerant broadcasting, etc., and have inspired many researchers’ interest. …”

Table 1_Integrative bioinformatics and experimental validation unveil CRISP3 as a hypoxia-, epithelial mesenchymal transition-, and immune-related prognostic biomarker and therapeu... by Yuanyuan Ren (798951)

“…Immune infiltration was assessed using CIBERSORT and ssGSEA analyses. Immunotherapy response was predicted using the tumor immune dysfunction and exclusion (TIDE) algorithm. …”