Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

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Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</p><p dir="ltr">The package includes:</p><ul><li>Scripts for first-order analysis, third-order modeling, optimization using a Physically Grounded Merit Function (PGMF), and RMS-based refinement.</li><li>A subfolder named <b>Images</b>, which stores the figures generated by six of the seven provided scripts.…”

Reward function related parameters. by Honglei Pang (22693724)

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The results of LASSO regression algorithm. by Xue Fu (549661)

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Core genes were selected through PPI analysis based on three algorithms. by Dong-Hee Han (140305)

“…<b>(C)</b> The top 10 genes were prioritized based on DEGREE analysis, which selects core proteins based on the number of interactions proteins have in the network.…”

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. by Jose Cleydson F. Silva (8685594)

Optimization Performance Comparison of Metaheuristic Algorithms. by Xie Qiu (13243770)

Explained variance ration of the PCA algorithm. by Abeer Aljohani (18497914)

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A framework for improving localisation prediction algorithms. by Sven B. Gould (12237287)

“…Classifiers on which the algorithms are trained could include parameters such as the evolutionary distance of a species, non-coding regions, or a protein’s abundance as a currently neglected factor. …”

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins by Martin J. Fossat (3714079)

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PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

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Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

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Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of... by Jordan Moutet (21800145)

Strong negative correlation between the precision of algorithms and the evolutionary distance from the training data. by Sven B. Gould (12237287)

PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”