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reported function » related function (Expand Search), related functions (Expand Search), reduced function (Expand Search)
algorithm python » algorithms within (Expand Search), algorithm both (Expand Search)
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An expectation-maximization algorithm for finding noninvadable stationary states.
Published 2020“…<i>(c)</i> Pseudocode for self-consistently computing <b>R</b>* and , which is identical to standard expectation-maximization algorithms employed for problems with latent variables in machine learning.…”
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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Runtime of algorithms.
Published 2022“…The runtimes are reported as a function of the product of the number of sequences and the number of columns in the alignment, as bar plots including outliers (translucent grey circles). …”
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Biological Function Assignment across Taxonomic Levels in Mass-Spectrometry-Based Metaproteomics via a Modified Expectation Maximization Algorithm
Published 2025“…To overcome this limitation, we implemented an expectation-maximization (EM) algorithm, along with a biological function database, within the MiCId workflow. …”
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The signal detection algorithm for constructing a neurometric function (the probability of segregation as a function of time) generates acceptable buildup fits at <i>DF</i> = 1, 3,...
Published 2020“…Lower panel: The signal detection algorithm constructs neurometric functions using numerical data from all <i>N</i><sub><i>in</i></sub> neuronal units. …”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”
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P -values for SGHHO and other reported algorithms by Wilcoxon test on the benchmark function.
Published 2023“…<p>P -values for SGHHO and other reported algorithms by Wilcoxon test on the benchmark function.…”
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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”