The codes and data for "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation" by FirstName LastName (20554465)

“…The <b>innovations</b> and <b>steps</b> in Case 3, including data download, sample generation, and parallel computation optimization, were independently developed and are not dependent on the GeoCube’s code.</p><h2>Requirements</h2><p dir="ltr">The codes use the following dependencies with Python 3.8</p><ul><li>torch==2.0.0</li><li>torch_geometric==2.5.3</li><li>networkx==2.6.3</li><li>pyshp==2.3.1</li><li>tensorrt==8.6.1</li><li>matplotlib==3.7.2</li><li>scipy==1.10.1</li><li>scikit-learn==1.3.0</li><li>geopandas==0.13.2</li></ul><p><br></p>…”

<b>Code and derived data for</b><b>Training Sample Location Matters: Accuracy Impacts in LULC Classification</b> by Pajtim Zariqi (22155799)

“…The workflow was implemented in Google Earth Engine (JavaScript API) and replicated in Python notebooks (Jupyter/Kaggle) for reproducibility.…”

<b>Use case codes of the DDS3 and DDS4 datasets for bacillus segmentation and tuberculosis diagnosis, respectively</b> by Marly G F Costa (19812192)

“…<p dir="ltr"><b>Use case codes of the DDS3 and DDS4 datasets for bacillus segmentation and tuberculosis diagnosis, respectively</b></p><p dir="ltr">The code was developed in the Google Collaboratory environment, using Python version 3.7.13, with TensorFlow 2.8.2. …”

Extending the pyAFQ software. by John Kruper (18809386)

Data and some code used in the paper:<b>Expansion quantization network: A micro-emotion detection and annotation framework</b> by Zhou (20184816)

“…</p><p dir="ltr">GPU：NVIDIA GeForce RTX 3090 GPU</p><p dir="ltr">Bert-base-cased pre-trained model: https://huggingface.co/google-bert/bert-base-cased</p><p dir="ltr">python=3.7，pytorch=1.9.0，cudatoolkit=11.3.1，cudnn=8.9.7.29.…”

Single Cell DNA methylation data for Human Brain altas (MajorType+Region CG allc files) by Wubin Ding (11823941)

“…</p><p dir="ltr">PMID: 37824674</p><p><br></p><h2>How to download</h2><p dir="ltr">To quickly download the whole folder, Python package <a href="https://github.com/DingWB/pyfigshare" rel="noreferrer" target="_blank">pyfigshare</a> can be implemented. please refer to pyfigshare documentation: <a href="https://github.com/DingWB/pyfigshare" rel="noreferrer" target="_blank">https://github.com/DingWB/pyfigshare</a></p><p dir="ltr">for example: <code>figshare download 28424780 -o downlnoaded_data</code></p>…”

Workflow of segmentation model creation and application. by Vincent Hickl (16947429)

Single Cell DNA methylation data for Human Brain altas MajorType allc files (CG+CH) by Wubin Ding (11823941)

“…</p><p dir="ltr">PMID: 37824674</p><p dir="ltr"><br></p><p dir="ltr">How to download</p><p dir="ltr">To quickly download the whole folder, Python package pyfigshare can be implemented. please refer to pyfigshare documentation: https://github.com/DingWB/pyfigshare</p><p dir="ltr">for example: figshare download 28424780 -o downlnoaded_data</p>…”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf by Rafael Pereira Lemos (9104911)

“…Here, we introduce COCαDA (COntact search pruning by Cα Distance Analysis), a Python-based command-line tool for improving search pruning in large-scale interatomic protein contact analysis using alpha-carbon (Cα) distance matrices. …”

HCC Evaluation Dataset and Results by Jens-Rene Giesen (18461928)

“…</p><h3>Report Script</h3><p dir="ltr">On the top-level directory you find a <code>report.py</code> file, which is an executable Python script. …”

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis by Alan Glanz (22109698)

“…</p><h2><b>Included Files</b></h2><h3><b>1. </b><code><strong>GenosophusV2.py</strong></code></h3><p dir="ltr">Executable Python implementation of the Genosophus Engine.…”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…Its efficiency and scalability make it well-suited for early-stage antibody discovery, repertoire profiling, and therapeutic design, particularly in the absence of structural data. The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…”

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) by zixuan yuan (17602152)

“…</li><li><code><strong>wllvm</strong></code>: The third-party library project WLLVM provides tools for building whole-program LLVM bitcode files from unmodified C or C++ source packages.…”

<b>Anthropogenic nutrient inputs cause excessive algal growth for nearly half the world’s population</b> by Richard McDowell (7311011)

“…<p dir="ltr">Contains</p><p dir="ltr">Final Analysis Output.xlsx: Current and reference concentrations of DRP, TP, NO3-N and TN along with pivot table analysis</p><p dir="ltr">Code: Python code used to implement the model in ArcGIS Pro.…”

Artifact for the IJCAI 2024 paper "Solving Long-run Average Reward Robust MDPs via Stochastic Games" by Krishnendu Chatterjee (15367413)

“…<br></pre></pre><h2>Structure and How to run</h2><p dir="ltr">There are four Python files in the repository.</p><pre><pre>(i) `StrategyIteration.py` is the backend code, containing the implementation of the RPPI algorithm described in the paper.…”

Keyhole Imagery Global Coverage Dataset (1960–1984) by Hao Li (20223762)

“…</li><li><b>Code</b>: Python scripts implementing the three-step workflow (imagery classification, global grid generation, and point-based property calculation).…”

Data and software for "Social networks affect redistribution decisions and polarization" by Milena Tsvetkova (11217969)

“…</p><p dir="ltr">The repository contains data in .csv and .xlsx format, model code in .nlogox Netlogo format, analysis code in .ipynb Jupyter notebooks, and helping code in .py Python files.…”