Results obtained from the Bistable Gut Inflammation Detector model. by Fabricio Cravo (21387854)

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Table_2_XCast: A python climate forecasting toolkit.docx by Kyle Joseph Chen Hall (13049001)

“…Heavy data preprocessing is needed: gridded data must be aggregated, reshaped, or reduced in dimensionality in order to fit the strict formatting requirements of Python's data science tools. Efficiently implementing this gridpoint-wise workflow is a time-consuming logistical burden which presents a high barrier to entry to earth data science. …”

Table_1_XCast: A python climate forecasting toolkit.docx by Kyle Joseph Chen Hall (13049001)

“…Heavy data preprocessing is needed: gridded data must be aggregated, reshaped, or reduced in dimensionality in order to fit the strict formatting requirements of Python's data science tools. Efficiently implementing this gridpoint-wise workflow is a time-consuming logistical burden which presents a high barrier to entry to earth data science. …”

Table_2_XCast: A python climate forecasting toolkit.docx by Kyle Joseph Chen Hall (13049001)

“…Heavy data preprocessing is needed: gridded data must be aggregated, reshaped, or reduced in dimensionality in order to fit the strict formatting requirements of Python's data science tools. Efficiently implementing this gridpoint-wise workflow is a time-consuming logistical burden which presents a high barrier to entry to earth data science. …”

Table_1_XCast: A python climate forecasting toolkit.docx by Kyle Joseph Chen Hall (13049001)

“…Heavy data preprocessing is needed: gridded data must be aggregated, reshaped, or reduced in dimensionality in order to fit the strict formatting requirements of Python's data science tools. Efficiently implementing this gridpoint-wise workflow is a time-consuming logistical burden which presents a high barrier to entry to earth data science. …”

<i>A priori</i> predictions of covariates included in multi-scale occupancy models to refine estimates of eDNA detection probabilities, sample occupancy, and site occupancy. by Sophia C. M. Orzechowski (6577349)

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Modelling COVID-19 evolution and control in Portugal: Code and data from 2 of March to 19 August 2020. by Ricardo Jorge Pais (3627494)

“…In this online repository we include the code for implementing the mathematical model and running the simulations using PLAS software. …”

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

“…Here we describe pyAscore, an efficient and versatile implementation of the Ascore algorithm in Python for scoring the localization of user defined PTMs in data dependent mass spectrometry. pyAscore can be used from the command line or imported into Python scripts and accepts standard file formats from popular software tools used in bottom-up proteomics. …”

Validation of model of the SNARE complex. by Adam Husar (18437351)

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Example model using BNGL. by Adam Husar (18437351)

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Model creation with CellBlender. by Adam Husar (18437351)

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NLoed: A Python Package for Nonlinear Optimal Experimental Design in Systems Biology by Nathan Braniff (14149834)

“…To support OED investigations, the NLoed package implements maximum likelihood fitting and diagnostic tools, providing a comprehensive modeling workflow. …”

A simple MCell4 model. by Adam Husar (18437351)

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Segmentation module training details. by Khelina Fedorchuk (19130089)

Tissue Forge performance metrics for windowless and real-time rendering modes. by T. J. Sego (9904909)

Comparative features of CF simulation tools. by Nassim Ataii (17382733)

“…<div><p>The Construction File (CF) specification establishes a standardized interface for molecular biology operations, laying a foundation for automation and enhanced efficiency in experiment design. It is implemented across three distinct software projects: PyDNA_CF_Simulator, a Python project featuring a ChatGPT plugin for interactive parsing and simulating experiments; ConstructionFileSimulator, a field-tested Java project that showcases ’Experiment’ objects expressed as flat files; and C6-Tools, a JavaScript project integrated with Google Sheets via Apps Script, providing a user-friendly interface for authoring and simulation of CF. …”

Python code and Excel data for machine learning integrated life cycle sustainability analysis of pyrolysis and hydrothermal carbonization of animal manure by Mohammed Tamim Zaki (17551557)

“…<p dir="ltr">The Python code comprises of a framework that integrated machine learning (ML) methods with life cycle sustainability analysis of implementing emerging technologies to recover valuable resources from organic waste streams. …”

Connecting a T1DM closed-loop algorithm written in python code to the development platform though the nexus communicator plugin. by Mohamed Raef Smaoui (9865830)

“…<p>The Python code implements an interface class to connect to the Platform. …”

PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Recommended structure of a standard MCell4 model. by Adam Husar (18437351)

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