Model creation with CellBlender. by Adam Husar (18437351)

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NLoed: A Python Package for Nonlinear Optimal Experimental Design in Systems Biology by Nathan Braniff (14149834)

“…To support OED investigations, the NLoed package implements maximum likelihood fitting and diagnostic tools, providing a comprehensive modeling workflow. …”

Estimated relationship between detection probability and sample collection time (temperature proxy). by Sophia C. M. Orzechowski (6577349)

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Estimated posterior distributions of site occupancy (ψ) in colony versus control sites. by Sophia C. M. Orzechowski (6577349)

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Total concentration of Burmese python eDNA at colony (dark grey bars) and control (light grey bars) pairs with 95% confidence intervals. by Sophia C. M. Orzechowski (6577349)

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Burmese python eDNA detections in wading bird colony habitat in Water Conservation Area 3 (WCA-3; red boundary) of the central Everglades in southern Florida (upper inset). by Sophia C. M. Orzechowski (6577349)

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A simple MCell4 model. by Adam Husar (18437351)

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Tissue Forge performance metrics for windowless and real-time rendering modes. by T. J. Sego (9904909)

Segmentation module training details. by Khelina Fedorchuk (19130089)

Comparative features of CF simulation tools. by Nassim Ataii (17382733)

“…<div><p>The Construction File (CF) specification establishes a standardized interface for molecular biology operations, laying a foundation for automation and enhanced efficiency in experiment design. It is implemented across three distinct software projects: PyDNA_CF_Simulator, a Python project featuring a ChatGPT plugin for interactive parsing and simulating experiments; ConstructionFileSimulator, a field-tested Java project that showcases ’Experiment’ objects expressed as flat files; and C6-Tools, a JavaScript project integrated with Google Sheets via Apps Script, providing a user-friendly interface for authoring and simulation of CF. …”

Python code and Excel data for machine learning integrated life cycle sustainability analysis of pyrolysis and hydrothermal carbonization of animal manure by Mohammed Tamim Zaki (17551557)

“…<p dir="ltr">The Python code comprises of a framework that integrated machine learning (ML) methods with life cycle sustainability analysis of implementing emerging technologies to recover valuable resources from organic waste streams. …”

Connecting a T1DM closed-loop algorithm written in python code to the development platform though the nexus communicator plugin. by Mohamed Raef Smaoui (9865830)

“…<p>The Python code implements an interface class to connect to the Platform. …”

Recommended structure of a standard MCell4 model. by Adam Husar (18437351)

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PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Reaction rules affecting repressor protein R in the hybrid model. by Adam Husar (18437351)

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Finites differences python code to solve CH equation with a source term and Comsol routine to solve Brusselator equation in radial domains. by Giulio Facchini (9031490)

“…<p dir="ltr"><b><i>* Cahn-Hilliard simulations *</i></b><br>Finite difference code implementing the modified Cahn Hilliard equation with a forward Euler scheme and the possibility to parallelize the solver using the numba python library.…”

Video5_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mov by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures by Nektarios Valous (20715650)

“…The output files generated by the code include results from both Python and MATLAB implementations; these output images are provided as validation, demonstrating that both implementations produce matching results.…”

ePSproc: Post-processing for ePolyScat (v1.1.0) by Paul Hockett (100955)

Reaction rules affecting repressor protein R in the particle-only model. by Adam Husar (18437351)

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