Modelling COVID-19 evolution and control in Portugal: Code and data from 2 of March to 19 August 2020. by Ricardo Jorge Pais (3627494)

“…In this online repository we include the code for implementing the mathematical model and running the simulations using PLAS software. …”

A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data by Anthony S. Barente (14035175)

“…Here we describe pyAscore, an efficient and versatile implementation of the Ascore algorithm in Python for scoring the localization of user defined PTMs in data dependent mass spectrometry. pyAscore can be used from the command line or imported into Python scripts and accepts standard file formats from popular software tools used in bottom-up proteomics. …”

NLoed: A Python Package for Nonlinear Optimal Experimental Design in Systems Biology by Nathan Braniff (14149834)

“…To support OED investigations, the NLoed package implements maximum likelihood fitting and diagnostic tools, providing a comprehensive modeling workflow. …”

Python scripts and notebooks by Ismail Belgacem (20845811)

Comparative features of CF simulation tools. by Nassim Ataii (17382733)

“…<div><p>The Construction File (CF) specification establishes a standardized interface for molecular biology operations, laying a foundation for automation and enhanced efficiency in experiment design. It is implemented across three distinct software projects: PyDNA_CF_Simulator, a Python project featuring a ChatGPT plugin for interactive parsing and simulating experiments; ConstructionFileSimulator, a field-tested Java project that showcases ’Experiment’ objects expressed as flat files; and C6-Tools, a JavaScript project integrated with Google Sheets via Apps Script, providing a user-friendly interface for authoring and simulation of CF. …”

Python code and Excel data for machine learning integrated life cycle sustainability analysis of pyrolysis and hydrothermal carbonization of animal manure by Mohammed Tamim Zaki (17551557)

“…<p dir="ltr">The Python code comprises of a framework that integrated machine learning (ML) methods with life cycle sustainability analysis of implementing emerging technologies to recover valuable resources from organic waste streams. …”

Connecting a T1DM closed-loop algorithm written in python code to the development platform though the nexus communicator plugin. by Mohamed Raef Smaoui (9865830)

“…<p>The Python code implements an interface class to connect to the Platform. …”

Python code for hierarchical cluster analysis of detected R-strategies from rule-based NLP on 500 circular economy definitions by Zahir Barahmand (18008947)

“…</p><p dir="ltr">This Python code was optimized and debugged using ChatGPT-4o to ensure implementation efficiency, accuracy, and clarity.…”

Finites differences python code to solve CH equation with a source term and Comsol routine to solve Brusselator equation in radial domains. by Giulio Facchini (9031490)

“…<p dir="ltr"><b><i>* Cahn-Hilliard simulations *</i></b><br>Finite difference code implementing the modified Cahn Hilliard equation with a forward Euler scheme and the possibility to parallelize the solver using the numba python library.…”

Video5_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mov by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures by Nektarios Valous (20715650)

“…The output files generated by the code include results from both Python and MATLAB implementations; these output images are provided as validation, demonstrating that both implementations produce matching results.…”

ePSproc: Post-processing for ePolyScat (v1.1.0) by Paul Hockett (100955)

Video3_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mp4 by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

Video2_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mp4 by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

Video6_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mp4 by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

Video1_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mp4 by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

Video4_SITCoM: SiRGraF Integrated Tool for Coronal dynaMics.mp4 by Purvi Udhwani (16989342)

“…<p>SiRGraF Integrated Tool for Coronal dynaMics (SITCoM) is based on the Simple Radial Gradient Filter used to filter the radial gradient in the white-light coronagraph images and bring out dynamic structures. …”

Data_Sheet_1_A Library for fMRI Real-Time Processing Systems in Python (RTPSpy) With Comprehensive Online Noise Reduction, Fast and Accurate Anatomical Image Processing, and Online... by Masaya Misaki (521986)

“…However, the adaption of rtfMRI has been limited due to technical difficulties in implementing an efficient computational framework. Here, we introduce a python library for real-time fMRI (rtfMRI) data processing systems, Real-Time Processing System in python (RTPSpy), to provide building blocks for a custom rtfMRI application with extensive and advanced functionalities. …”

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”

SLIM Tricks: Tools, Concepts, and Strategies for the Development of Planar Ion Guides by Cullen Greer (16495242)

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