BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data حسب Jean-Christophe Lachance (6619307)

"…To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …"

Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule حسب Leyla Noroozbabaee (14301173)

Invert4Geom; Progress towards an open-source geometric gravity inversion with stochastic uncertainty analysis حسب Matt Tankersley (11769215)

"…Here, we present a preliminary inversion algorithm written in Python to perform these geometric style of gravity inversions. …"

Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. حسب Samuel Cure (22250922)

PyRates—A Python framework for rate-based neural simulations حسب Richard Gast (8129451)

"…In this work, we present PyRates, a Python framework that provides the means to build a large variety of rate-based neural models. …"

Python programming code for the stochastic inference of disease interval distributions. حسب Günter Schneckenreither (10099380)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. حسب Giacomo Janson (8138517)

الموضوعات:

Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization حسب Huichao Yin (14589020)

"…<p dir="ltr">Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization.…"

Example of loading and running BNGL model in MCell4. حسب Adam Husar (18437351)

"…<p>Python code for an MCell4 model that will implement loading of the BNGL file shown in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011800#pcbi.1011800.g010" target="_blank">Fig 10</a> (referenced as subsystem.bngl). …"

PYTHON حسب Kan Jia (21666161)

Boundary-value problems and solutions for the examined numerical models. حسب Xuzhen He (14676114)

الموضوعات:

Five Operator Lattice Simulation حسب James McDaniel (22522571)

"…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…"

Performance metrics for ProSmith and previously published methods for DTA prediction on the random split of the Davis dataset. حسب Alexander Kroll (9304225)

الموضوعات:

Performance metrics for ProSmith and previously published methods for DTA prediction for different splitting scenarios. حسب Alexander Kroll (9304225)

الموضوعات:

For accurate DTA predictions, ProSmith requires training on identical drugs but not on similar proteins. حسب Alexander Kroll (9304225)

الموضوعات:

Coefficient of determination <i>R</i>² of ProSmith for different splitting scenarios of the Davis dataset. حسب Alexander Kroll (9304225)

الموضوعات:

We divided the ESP test set into subsets according to the number of positive data points with the same small molecule in the training set. حسب Alexander Kroll (9304225)

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Performance metrics for ProSmith and ESP for the prediction of enzyme-substrate pairs. حسب Alexander Kroll (9304225)

الموضوعات:

We divided the ESP test set into subsets according to the maximal sequence identity of an enzyme compared to all training enzymes. حسب Alexander Kroll (9304225)

الموضوعات:

Drug-target affinity predictions improve with increasing drug similarity score compared to the training drugs. حسب Alexander Kroll (9304225)

الموضوعات: