Non-biomedical word replacement algorithm: This algorithm outlines the process for replacing non-biomedical words in a corpus using WordNet. by Enock Niyonkuru (21246879)

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Comparison of mean interconcept distance for embedding with WordNet synonym replacement (WN) and without (PM). The initial number of unique concepts in the total corpus was 3,018,9... by Enock Niyonkuru (21246879)

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Comparative analysis of WN and PM methodologies: Figure (a) displays the bar chart comparing WN and PM across five distinct concept sets (Methods), highlighting the number of conce... by Enock Niyonkuru (21246879)

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Bursty model and Refractory model simulation results. (A) Bursty model simulation results ( samples). The production of nascent mRNA occurs in bursts and degrade after delay time <... by Ziyan Jin (21021976)

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DeepB3Pred - code by Saleh Musleh (22263718)

Flowchart representation of lion optimization algorithm for hyperparameter tuning in the HCAP model. by Mohanad Faeq Ali (21354273)

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Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

DeepB3Pred_source_code by Muhammad Arif (17012472)

RNA Velocity model simulation results. (A) Simulation results for RNA Velocity model without delay ( samples). The simulation is composed of an up-regulation phase (both production... by Ziyan Jin (21021976)

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Modeling lung cancer AST network and its perturbation with a SOX2 degrader. (A) Lung Cancer AST Network and the corresponding stochastic equations. Parameters are , , , , , , , , w... by Ziyan Jin (21021976)

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Scripts, data and figures underpinning 'Towards the Creation of Legible Octilinear Power Grid Diagrams Using Mixed Integer Linear Programming' by Paul Cuffe (2937081)

“…<p dir="ltr">These Python notebooks implement the techniques described in the paper "Towards the Creation of Legible Octilinear Power Grid Diagrams Using Mixed Integer Linear Programming".…”

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”

Reproducible Code and Data for figures by Bonyad Ahmadi (20750327)

“…</i></p><p dir="ltr">It contains:</p><p dir="ltr">✅ <b>Python Code</b> – Scripts used for data preprocessing, and visualization.…”

SEPARATE Code Repository by Gyuri Kim (21424973)

software code of NeoDesign by Wenqian Yu (19730101)

“…Before running the program, it is necessary to check or download python packages and local functions as follow:</p><ul><li>gor4</li><li>mhcflurry</li><li>NetMHCpan4.1</li><li>NetChop3.1</li><li>pepsickle</li><li>hmmer(>3.4)</li></ul><h3>See the read.md file for instructions on how to use the code.…”

The codes and data for "Lane Extraction from Trajectories at Road Intersections Based on Graph Transformer Network" by Chongshan Wan (19247614)

“…</li><li>`test_GTN.py`: Contains the code for model inference and lane extraction.</li></ul><h2>Running the Code</h2><h3><b>Data processing and feature extraction</b></h3><pre>python run_process.py</pre><p dir="ltr">This step processes trajectory data, extracts graph node features and edge features, and saves them as CSV files in the `processed_data` folder.…”

Simulation Code and Raw Data by Melih Özkurt (22278520)

“…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …”

RealBench: A Repo-Level Code Generation Benchmark Aligned with Real-World Software Development Practices by RealBench RealBench (22275393)

“…<br>│ │ └── uml_dag.py # UML dependency graph analysis.<br>│ ├── model_gen/ # Code generation using various LLMs.<br>│ │ ├── generate/ # LLM inference implementations.…”