Smart Reaction Templating: A Graph-Based Method for Automated Molecular Dynamics Input Generation by Julian Konrad (9609845)

“…Accurately modeling chemical reactions in molecular dynamics simulations requires detailed pre- and postreaction templates, often created through labor-intensive manual workflows. …”

Parallel Sampling of Decomposable Graphs Using Markov Chains on Junction Trees by Mohamad Elmasri (19421498)

“…We find that our parallel sampler yields improved mixing properties in comparison to the single-move variate, and outperforms current state-of-the-art methods in terms of accuracy and computational efficiency. The implementation of our work is available in the Python package parallelDG. …”

Supporting data for "Software library to quantify the value of forecasts for decision-making: Case study on sensitivity to damages" by Laugesen et al. (2025) by Richard Laugesen (6480371)

“…<br></p><p dir="ltr">Journal paper introduces RUVPY, a Python software library which implements the Relative Utility Value (RUV) method. …”

Spotted owl habitat quality maps and disturbance attribution analysis by Josh Barry (7573823)

“…<p dir="ltr">This dataset includes annual spatial maps of spotted owl nesting habitat quality in Southern California and an accompanying ArcPython script used to attribute negative annual habitat change to wildfire (Barry et al., 2025). …”

Recursive generation of substructures using point data by Jackie R (18359715)

“…<p dir="ltr">The dataset contains generated substructure using POI in China, the pseudo code for the algorithm and python implement of the algorithm. …”

Computing speed and memory usage. by David Berling (22170661)

“…Computing time increases with increasing volume along radial (solid blue) and depth direction (dashed orange) with different slope. Original model computation time is marked with a red cross and was simulated in the same spatial volume as the first data point of the replicated model. …”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Cathode carbon block material parameters [14]. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Sodium concentration distribution cloud map. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Sodium binding coefficient R. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Probabilistic-QSR-GeoQA by Mohammad Kazemi (19442467)

“…<p dir="ltr">The code and data are related to the paper Mohammad Kazemi Beydokhti, Matt Duckham, Amy L. …”

<b>DeepB3Pred</b> by Saleh Musleh (22263718)

Smart contract and interface code for Nature Energy "A general form of smart contract for decentralised energy systems management" by Lee Thomas (19655773)

“…This provides the modelled electricity network cost data, the smart contract code, and the Python interface scripts described in the Nature Energy Paper  "A general form of smart contract for decentralised energy systems management." …”

Accompanying data files (Melbourne, Washington DC, Singapore, and NYC-Manhattan) by Winston Yap (13771969)

“…</p><p dir="ltr">Each zipped folder consists the following files:</p><ul><li>Graph data - City object nodes (.parquet) and COO format edges (.txt)</li><li>predictions.txt (model predictions from GraphSAGE model)</li><li>final_energy.parquet (Compiled training and validation building energy data)</li></ul><p dir="ltr">The provided files are supplementary to the code repository which provides Python notebooks stepping through the data preprocessing, GNN training, and satellite imagery download processes. …”

Global Graph Dataset by Winston Yap (13771969)

Replication package for Exploring the relation between source code commit information and SonarQube issues by Liviu Marian Berciu (17797934)

Global Research Dataset on Social Media in Entrepreneurial Startup (2009–2024) by Lucky Ario (22115884)

“…Analytical outputs are organized into multiple formats: CSV files for raw bibliometric data; PNG images for thematic maps, trend topic visualizations, and research flowcharts; and CSV and PNG outputs for annual publication trajectories and polynomial regression-based modeling projections. Visualization and analysis were conducted using Microsoft Excel for summary statistics, R Biblioshiny for thematic and trend mapping, and Python for projection modeling.…”

Data Sheet 1_Establishing a real-time biomarker-to-LLM interface: a modular pipeline for HRV signal acquisition, processing, and physiological state interpretation via generative A... by Morris Gellisch (18627744)

“…</p>Discussion<p>This system represents an early prototype of bioadaptive AI, in which physiological signals are incorporated as part of the model's input context.…”

Leue Modulation Coefficients (LMC): A Smooth Continuum Embedding of Bounded Arithmetic Data by Jeanette Leue (22470409)

“…This Zenodo package includes: the full research paper (PDF), a complete Python implementation generating the LMC field and conductivity model, a numerical plot comparing discrete LMC values with the smoothed continuum field, a cover letter and supporting documentation. …”

MYCroplanters can quantify the interaction between pathogenic and non-pathogenic bacteria and their effects on plant health. by Melissa Y. Chen (11301882)

“…(e) Figure showing data from (d) converted into binary health/disease scores. Each dot represents a single plant. Black lines with ribbons are Bayesian model predictions with 95% prediction intervals, respectively. …”