Example ALAAMEE output. by Alex Stivala (8356257)

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Type II error rate as the number of runs used for each sample is varied. by Alex Stivala (8356257)

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Parameter estimates and estimated standard errors from the EE algorithm. by Alex Stivala (8356257)

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Network descriptive statistics for the Deezer networks. by Alex Stivala (8356257)

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Example ALAAMEE goodness-of-fit output. by Alex Stivala (8356257)

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Illustration of the text transformation process before and after synonym replacement: The process begins with a sample initial text segment (Sample text before synonym replacement’... by Enock Niyonkuru (21246879)

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Schematic of the approach: This schematic illustrates the entire workflow of the project. by Enock Niyonkuru (21246879)

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Text Transformation Pipeline: An example of the multi-stage text transformation pipeline applied to a sample abstract (PMID: 30609739). by Enock Niyonkuru (21246879)

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Comparative analysis of WordNet replacement impact on data distribution. by Enock Niyonkuru (21246879)

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Comparison of window size for embedding with Wordnet synonym replacement (WN) and without (PM). While Table 1 compared the effects of different values of using a window size of 10,... by Enock Niyonkuru (21246879)

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Non-biomedical word replacement algorithm: This algorithm outlines the process for replacing non-biomedical words in a corpus using WordNet. by Enock Niyonkuru (21246879)

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Comparison of mean interconcept distance for embedding with WordNet synonym replacement (WN) and without (PM). The initial number of unique concepts in the total corpus was 3,018,9... by Enock Niyonkuru (21246879)

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Comparative analysis of WN and PM methodologies: Figure (a) displays the bar chart comparing WN and PM across five distinct concept sets (Methods), highlighting the number of conce... by Enock Niyonkuru (21246879)

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Bursty model and Refractory model simulation results. (A) Bursty model simulation results ( samples). The production of nascent mRNA occurs in bursts and degrade after delay time <... by Ziyan Jin (21021976)

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DeepB3Pred - code by Saleh Musleh (22263718)

Flowchart representation of lion optimization algorithm for hyperparameter tuning in the HCAP model. by Mohanad Faeq Ali (21354273)

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Code by Baoqiang Chen (21099509)

“…We divided the dataset into training and test sets, using 70% of the genes for training and 30% for testing. We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”

DeepB3Pred_source_code by Muhammad Arif (17012472)

RNA Velocity model simulation results. (A) Simulation results for RNA Velocity model without delay ( samples). The simulation is composed of an up-regulation phase (both production... by Ziyan Jin (21021976)

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Modeling lung cancer AST network and its perturbation with a SOX2 degrader. (A) Lung Cancer AST Network and the corresponding stochastic equations. Parameters are , , , , , , , , w... by Ziyan Jin (21021976)

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