Overview of deep learning terminology. by Aaron E. Maxwell (8840882)

“…This paper introduces the geodl R package, which supports pixel-level classification applied to a wide range of geospatial or Earth science data that can be represented as multidimensional arrays where each channel or band holds a predictor variable. geodl is built on the torch package, which supports the implementation of DL using the R and C++ languages without the need for installing a Python/PyTorch environment. …”

Compiled Global Dataset on Digital Business Model Research by Dimas Fauzan Aryadefa (22123186)

“…</p><p dir="ltr">For the modeling component, annual publication growth is projected from 2025–2034 using a logistic growth model (S-curve) implemented in Python. …”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…<p dir="ltr">The <i>zip</i> file contains the code for the functional excitation-inhibition ratio (fE/I) and theta-gamma (θ-γ) phase-amplitude coupling (PAC) analyses described in the paper titled "<b>Hippocampal and cortical activity reflect early </b><b>hyperexcitability</b><b> in an Alzheimer's mouse model</b>" submitted to <i>Brain Communications</i> in April 2025.…”

Iterative Methods for Vecchia-Laplace Approximations for Latent Gaussian Process Models by Pascal Kündig (19824557)

“…In particular, we obtain a speed-up of an order of magnitude compared to Cholesky-based calculations and a 3-fold increase in prediction accuracy in terms of the continuous ranked probability score compared to a state-of-the-art method on a large satellite dataset. All methods are implemented in a free C++ software library with high-level Python and R packages. …”

Numerical analysis and modeling of water quality indicators in the Ribeirão João Leite reservoir (Goiás, Brazil) by Amanda Bueno de Moraes (22559249)

“…The code implements a statistical–computational workflow for parameter selection (VIF, Bartlett and KMO tests, PCA and FA with <i>varimax</i>) and then trains and evaluates machine-learning models to predict three key physico-chemical indicators: turbidity, true color, and total iron. …”

Neural-Signal Tokenization and Real-Time Contextual Foundation Modelling for Sovereign-Scale AGI Systems by Lakshit Mathur (20894549)

“…The work advances national AI autonomy, real-time cognitive context modeling, and ethical human-AI integration.</p><p dir="ltr"><b>Availability</b> — The repository includes LaTeX sources, trained model checkpoints, Python/PyTorch code, and synthetic datasets. …”

face recognation with Flask by Muammar, SST, M.Kom (21435692)

“…</li><li><b>Face Recognition Engine:</b> Compares detected faces to known faces using deep learning models (e.g., <code>face_recognition</code>, based on dlib’s ResNet).…”

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF by Shivani V. Pawar (20355171)

“…</p>Methods<p>Prostruc is a Python-based homology modeling tool designed to simplify protein structure prediction through an intuitive, automated pipeline. …”

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF by Shivani V. Pawar (20355171)

“…</p>Methods<p>Prostruc is a Python-based homology modeling tool designed to simplify protein structure prediction through an intuitive, automated pipeline. …”

Replication Package by Fatemeh Hadadi (14651705)

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis by Alan Glanz (22109698)

“…</p><h2><b>Included Files</b></h2><h3><b>1. </b><code><strong>GenosophusV2.py</strong></code></h3><p dir="ltr">Executable Python implementation of the Genosophus Engine.…”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…”

Image 1_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Image 2_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Overview of generalized weighted averages. by Nobuhito Manome (8882084)

“…GWA-UCB1 outperformed G-UCB1, UCB1-Tuned, and Thompson sampling in most problem settings and can be useful in many situations. The code is available at <a href="https://github.com/manome/python-mab" target="_blank">https://github.com/manome/python-mab</a>.…”

Missing Value Imputation in Relational Data Using Variational Inference by Simon Fontaine (7046618)

“…Additional results, implementation details, a Python implementation, and the code reproducing the results are available online. …”

Collaborative Research: Framework: Improving the Understanding and Representation of Atmospheric Gravity Waves using High-Resolution Observations and Machine Learning by Joan Alexander (17047170)

“…Establishing a framework for implementing and testing ML-based parameterizations in atmospheric models. …”

Parallel Sampling of Decomposable Graphs Using Markov Chains on Junction Trees by Mohamad Elmasri (19421498)

“…We find that our parallel sampler yields improved mixing properties in comparison to the single-move variate, and outperforms current state-of-the-art methods in terms of accuracy and computational efficiency. The implementation of our work is available in the Python package parallelDG. …”

Supporting data for "Software library to quantify the value of forecasts for decision-making: Case study on sensitivity to damages" by Laugesen et al. (2025) by Richard Laugesen (6480371)

“…<br></p><p dir="ltr">Journal paper introduces RUVPY, a Python software library which implements the Relative Utility Value (RUV) method. …”

Spotted owl habitat quality maps and disturbance attribution analysis by Josh Barry (7573823)

“…<p dir="ltr">This dataset includes annual spatial maps of spotted owl nesting habitat quality in Southern California and an accompanying ArcPython script used to attribute negative annual habitat change to wildfire (Barry et al., 2025). …”