PyRates—A Python framework for rate-based neural simulations by Richard Gast (8129451)

“…In this work, we present PyRates, a Python framework that provides the means to build a large variety of rate-based neural models. …”

Python programming code for the stochastic inference of disease interval distributions. by Günter Schneckenreither (10099380)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. by Giacomo Janson (8138517)

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Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization by Huichao Yin (14589020)

“…<p dir="ltr">Python implementation for image-based ERT inversion using ViT, CNN, UNet, and LDM models, and related data conversion and visualization.…”

Example of loading and running BNGL model in MCell4. by Adam Husar (18437351)

“…<p>Python code for an MCell4 model that will implement loading of the BNGL file shown in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011800#pcbi.1011800.g010" target="_blank">Fig 10</a> (referenced as subsystem.bngl). …”

PYTHON by Kan Jia (21666161)

Boundary-value problems and solutions for the examined numerical models. by Xuzhen He (14676114)

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Five Operator Lattice Simulation by James McDaniel (22522571)

“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”

Performance metrics for ProSmith and previously published methods for DTA prediction on the random split of the Davis dataset. by Alexander Kroll (9304225)

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Performance metrics for ProSmith and previously published methods for DTA prediction for different splitting scenarios. by Alexander Kroll (9304225)

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For accurate DTA predictions, ProSmith requires training on identical drugs but not on similar proteins. by Alexander Kroll (9304225)

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Coefficient of determination <i>R</i>² of ProSmith for different splitting scenarios of the Davis dataset. by Alexander Kroll (9304225)

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We divided the ESP test set into subsets according to the number of positive data points with the same small molecule in the training set. by Alexander Kroll (9304225)

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Performance metrics for ProSmith and ESP for the prediction of enzyme-substrate pairs. by Alexander Kroll (9304225)

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We divided the ESP test set into subsets according to the maximal sequence identity of an enzyme compared to all training enzymes. by Alexander Kroll (9304225)

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Drug-target affinity predictions improve with increasing drug similarity score compared to the training drugs. by Alexander Kroll (9304225)

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Performance metrics of ProSmith and previously published methods for the prediction of Michaelis constants <i>K</i>_M. by Alexander Kroll (9304225)

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Hyperparameters of the ProSmith Transformer Network. by Alexander Kroll (9304225)

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Enzyme-substrate pair predictions improve with increasing substrate similarity compared to training substrates. by Alexander Kroll (9304225)

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Optimal implementation of matrix operations on the CPU platform (double precision; solid black line = benchmarked bandwidth; lines + symbols = effective bandwidth; black = COPY2D;... by Xuzhen He (14676114)

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