Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection by Huichao Yin (14589020)

“…<p dir="ltr">Python image preprocessing and model implementation for research of "Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection".…”

Supplementary Material by Aris Shahbazian (22464325)

“…The supplementary material includes the full Python-based implementation of the AI-driven optimization framework described in the manuscript. …”

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…Extract homologs for all the 501 samples</p><p dir="ltr"><i>python2 blast_to_mcl.py all.rawblast 0.25 >mcl_all_rawblast_out_nohup_out_0.25</i></p><p dir="ltr"><i>mcl mcl_all_rawblast_out_nohup_out_0.25 --abc -te 80 -tf 'gq(5)' -I 1.5 -o hit-frac0.25_I1.5_e5</i></p><p dir="ltr"><i>python2 write_fasta_files_from_mcl.py all.fa hit-frac0.25_I1.5_e5 minimal_taxa outDIR</i></p><p><br></p><p dir="ltr"><b>Step 5: Build Maximum likelihood tree for each homolog group</b></p><p dir="ltr"><i>python2 fasta_to_tree_pxclsq.py fasta_dir number_cores dna bootstrap(y)</i></p><p><br></p><p dir="ltr"><b>Step 6: Extract ortholog groups</b></p><p dir="ltr">Instead of 1to1, MI, RT, or MO methods in Ya et al. (2014), we used a revised version of DISCO (https://github.com/JSdoubleL/DISCO) to infer homologs. …”

Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds by Gloria Castañeda-Valencia (20758502)

“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

Mean Annual Habitat Quality and Its Driving Variables in China (1990–2018) by ChenXi Zhu (21374876)

“…</p><p dir="ltr">(HQ: Habitat Quality; CZ: Climate Zone; FFI: Forest Fragmentation Index; GPP: Gross Primary Productivity; Light: Nighttime Lights; PRE: Mean Annual Precipitation Sum; ASP: Aspect; RAD: Solar Radiation; SLOPE: Slope; TEMP: Mean Annual Temperature; SM: Soil Moisture)</p><p dir="ltr"><br>A Python script used for modeling habitat quality, including mean encoding of the categorical variable climate zone (CZ), multicollinearity testing using Variance Inflation Factor (VIF), and implementation of four machine learning models to predict habitat quality.…”

A Structured Attempt at a Polynomial-Time Solution to the Subset Sum Problem and Its Implications for P vs NP by MInakshi Aggarwal (21677633)

“…The manuscript includes theoretical formulation, Python implementation, verified output snapshots, and detailed analysis — aimed at opening fresh discourse on the P vs NP question. …”

PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation by David Lewis Stewart Parry (22188211)

“…PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation This release provides the complete, reproducible numerical implementation of the Parry Tensional Phase Collapse (PTPC) model — the dynamic core of the Universal Heartbeat Theory (UHT/PTPC). …”

Summary of Tourism Dataset. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Segment-wise Spending Analysis. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Hyperparameter Parameter Setting. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Marketing Campaign Analysis. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Visitor Segmentation Validation Accuracy. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Integration of VAE and RNN Architecture. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Folder with all data and algorithms by Jorge Servert Lerdo de Tejada (22290001)

“…In this study, we present an open-source, Python-based computational framework that unifies photon transport modeling, probe geometry optimization, and photothermal safety assessment into a single workflow. …”

Contrast enhancement of digital images using dragonfly algorithm by Soumyajit Saha (19726163)

“…The Python implementation of the proposed approach is available in this <a href="https://github.com/somnath796/DA_contrast_enhancement" target="_blank">Github repository</a>.…”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …”

Table 1_Analysis of distribution equilibrium and influencing factors for older adult meal service facilities in mainland China.xlsx by Feng Wang (44414)

“…A multiple linear regression model was applied to explore the relationships between older adult meal services and factors such as population, economy, infrastructure, geography, and policies.…”

Landscape Change Monitoring System (LCMS) Conterminous United States Cause of Change (Image Service) by U.S. Forest Service (17476914)

“…The resulting suite of LCMS change, land cover, and land use maps offer a holistic depiction of landscape change across the United States over the past four decades.Predictor layers for the LCMS model include outputs from the LandTrendr and CCDC change detection algorithms and terrain information. …”

3D PD-Controlled Nanorobot Swarm Simulation for Targeted Cancer and BBB Therapy by Umar Tabbsum (22058780)

“…Cancer-targeting nanorobots converge rapidly, while BBB-targeting nanorobots follow more complex paths due to navigation constraints.</p><p dir="ltr">Implemented in Python (NumPy, Matplotlib, 3D visualization), the framework is fully annotated and reproducible. …”