Data Sheet 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

MSc Personalised Medicine at Ulster University by Steven Watterson (100045)

“…</b> Introducing computational approaches to studying genes, proteins or metabolites, this module teaches Python coding, data analysis and how to work with the databases that support data analysis.…”

PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation by David Lewis Stewart Parry (22188211)

“…PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation This release provides the complete, reproducible numerical implementation of the Parry Tensional Phase Collapse (PTPC) model — the dynamic core of the Universal Heartbeat Theory (UHT/PTPC). …”

Void-Center Galaxies and the Gravity of Probability Framework: Pre-DESI Consistency with VGS 12 and NGC 6789 by Jordan Waters (21620558)

“…<br><br><br><b>ORCID ID: https://orcid.org/0009-0009-0793-8089</b><br></p><p dir="ltr"><b>Code Availability:</b></p><p dir="ltr"><b>All Python tools used for GoP simulations and predictions are available at:</b></p><p dir="ltr"><b>https://github.com/Jwaters290/GoP-Probabilistic-Curvature</b><br><br>The Gravity of Probability framework is implemented in this public Python codebase that reproduces all published GoP predictions from preexisting DESI data, using a single fixed set of global parameters. …”

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) by zixuan yuan (17602152)

“…</p><pre><pre>sudo apt-get install -y wget git build-essential python3 python python-pip python3-pip tmux cmake libtool libtool-bin automake autoconf autotools-dev m4 autopoint libboost-dev help2man gnulib bison flex texinfo zlib1g-dev libexpat1-dev libfreetype6 libfreetype6-dev libbz2-dev liblzo2-dev libtinfo-dev libssl-dev pkg-config libswscale-dev libarchive-dev liblzma-dev liblz4-dev doxygen libncurses5 vim intltool gcc-multilib sudo --fix-missing<br></pre></pre><pre><pre>pip install numpy && pip3 install numpy && pip3 install sysv_ipc<br></pre></pre><h4><b>Download the Code</b></h4><p dir="ltr">Download <b>DD4AV</b> from the Figshare website to your local machine and navigate to the project directory:</p><pre><pre>cd DD4AV<br></pre></pre><h4><b>Configure Environment and Install the Tool</b></h4><p dir="ltr">For convenience, we provide shell scripts to automate the installation process. …”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

“…(NEXRAD), using open-source tools from the Python ecosystem such as Xarray, Xradar, and Dask to enable efficient parallel processing and scalable analysis. …”

Artifact for the IJCAI 2024 paper "Solving Long-run Average Reward Robust MDPs via Stochastic Games" by Krishnendu Chatterjee (15367413)

“…<br></pre></pre><h2>Structure and How to run</h2><p dir="ltr">There are four Python files in the repository.</p><pre><pre>(i) `StrategyIteration.py` is the backend code, containing the implementation of the RPPI algorithm described in the paper.…”

Comprehensive Fluid and Gravitational Dynamics Script for General Symbolic Navier-Stokes Calculations and Validation by Stylianos Touloumidis (19938747)

“…It provides a flexible foundation on which theoretical assumptions can be validated, and practical calculations performed. Implemented in Python with symbolic calculations, the script facilitates in-depth analysis of complex flow patterns and makes advanced mathematical computations more accessible. …”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…</p><p dir="ltr">Globus Compute [2] is a Function-as-a-Service platform designed to provide a scalable, secure, and simple interface to HPC resources. Globus Compute implements a federated model via which users may deploy endpoints on arbitrary remote computers, from the edge to high performance computing (HPC) cluster, and they may then invoke Python functions on those endpoints via a reliable cloud-hosted service. …”

Research Database by Ana Paula Fermiano (22439479)

“…</p><p dir="ltr">Statistical analysis was conducted through <b>multiple regression models</b> implemented in <b>Jamovi</b>, supported by Geographic Information System (GIS) tools to visualize spatial patterns. …”

<b>Anthropogenic nutrient inputs cause excessive algal growth for nearly half the world’s population</b> by Richard McDowell (7311011)

“…</p><p dir="ltr">Models: R code to explore different models for implementation via Python in ArcGIS</p><p dir="ltr">!…”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">Reproducibility Resources:</p><p dir="ltr">Python scripts for reproducing figures, preprocessing data, and training machine learning models (SVM, MLP, XGB, BRR, KRR).…”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">Reproducibility Resources:</p><p dir="ltr">Python scripts for reproducing figures, preprocessing data, and training machine learning models (SVM, MLP, XGB, BRR, KRR).…”

OHID-FF dataset for forest fire detection and classification by xin chen (20496938)

“…Prepare the YOLODataset structure (if you need to rebuild it):</p><p dir="ltr">```bash</p><p dir="ltr">python "train val scripts/prepare_data.py"</p><p>```</p><p dir="ltr"><br></p><p dir="ltr">3. …”

<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

“…The pseudo-code follows standard Python syntax specifications for functions and loops and is easy to understand and implement. …”

Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection by Huichao Yin (14589020)

“…<p dir="ltr">Python image preprocessing and model implementation for research of "Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection".…”

Reproducible Code and Data for figures by Bonyad Ahmadi (20750327)

“…<br>✅ <b>Generated Figures</b> – High-resolution images illustrating model outputs and analytical results.<br>✅ <b>Machine Learning Models</b> – Implementation of <b>K-Nearest Neighbors (KNN) regression</b> with different distance metrics (<b>Mahalanobis, Fuzzy Mahalanobis, Euclidean</b>).…”

Curvature-Adaptive Embedding of Geographic Knowledge Graphs in Hyperbolic Space by chenchen Guo (21327470)

“…/CAH-GKGE/model/supplementary instruction.md </p>…”

Supplementary Material by Aris Shahbazian (22464325)

“…The supplementary material includes the full Python-based implementation of the AI-driven optimization framework described in the manuscript. …”

Monte Carlo Simulation Code for Evaluating Cognitive Biases in Penalty Shootouts Using ABAB and ABBA Formats by Raul MATSUSHITA (10276562)

“…<p dir="ltr">This Python code implements a Monte Carlo simulation to evaluate the impact of cognitive biases on penalty shootouts under two formats: ABAB (alternating shots) and ABBA (similar to tennis tiebreak format). …”