Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Python scripts and notebooks by Ismail Belgacem (20845811)

Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management by Pavel Izosimov (20096259)

“…</li><li><b>Commercial Distribution</b>: Safely share Python code with clients or customers, implementing advanced <b>Python code protection tools</b> for sales or rentals.…”

System Hardware ID Generator Script: A Cross-Platform Hardware Identification Tool by Pavel Izosimov (20096259)

“…</li><li><b>Cross-Platform Compatibility</b>: Designed with cross-platform functionality in mind, the script works seamlessly on Windows, macOS, Linux, Unix, and other operating systems where Python 3.6 or higher is installed.</li><li><b>Modular Design</b>: The script can be used as a standalone tool or imported as a module into other Python projects, enabling developers to easily integrate hardware identification into their applications.…”

Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

Multi-Version PYZ Builder Script: A Universal Python Module Creation Tool by Pavel Izosimov (20096259)

“…Once the protected .pyc files are prepared, the script bundles them into a single .pyz archive.The script requires Python 3.6 or higher, and the following Python packages:</p><ul><li>requests</li><li>psutil</li><li>cryptography</li><li>astor</li></ul><p dir="ltr"><b>Recommendations and Best Practices</b></p><ul><li><b>Enhance Protection with Multiple Layers</b>: Apply the <b>Local Python Code Protector</b> multiple times to each .pyc file before bundling them. …”

Python Implementation of HSGAdviser Chatbot: AI model for Sustainable Education by Suha Assayed (22454038)

“…<p dir="ltr">This repository contains the Python source code and model implementation for HSGAdviser, an AI speech assistant designed to provide personalized college and career guidance for high school students through conversational AI. …”

An example Python input file for the CA4 binder design. by Jakub Lála (17136205)

Python file of the computational framework. by Benoit Haut (9753029)

Overview of the implemented simulation tool and training framework in Diffrax. by Paul van Lent (16876977)

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Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. by Samuel Cure (22250922)

“…<p>We simulate SIR epidemic processes on Watts-Strogatz networks with parameters <i>k</i>₀ = 5, <i>p</i> = 0.1 <b>(a)</b> and Barabási-Albert networks with parameter <i>m</i> = 5 <b>(b)</b> using the Python wrapper of our C++ implementation and compare its performance with the Python library from Ref. …”

Five Operator Lattice Simulation by James McDaniel (22522571)

“…</p><p dir="ltr">Running the included file <code>five_operator_lattice_sim.py</code> (Python 3.14 + NumPy 2.1) reproduces the dynamic interactions and figures reported in Appendix A of the paper, generating time-series data that demonstrate operator balance, instability, and renewal cycles.…”

EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

“…To overcome these challenges, we developed EthoPy, an open-source, Python-based behavioral control framework that integrates stimulus presentation, hardware management, and data logging. …”

Fitting a feast/famine cycle to a glycolysis model. by Paul van Lent (16876977)

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Jaxkineticmodel allows for hybridizing kinetic models with neural networks. by Paul van Lent (16876977)

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Analysis of convergence properties for a collection of SBML models. by Paul van Lent (16876977)

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Overview of the SBML models used in this study. The collection of models was retrieved from Biomodels [43] and a previously reported collection of SBML benchmark models [11]. The n... by Paul van Lent (16876977)

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Performance Benchmark: SBMLNetwork vs. SBMLDiagrams Auto-layout. by Adel Heydarabadipour (22290905)

“…<p>Log–log plot of median wall-clock time for SBMLNetwork’s C++-based auto-layout engine (blue circles, solid fit) and SBMLDiagrams’ implementation of the pure-Python NetworkX spring_layout algorithm (red squares, dashed fit), applied to synthetic SBML models containing 20–2,000 species, with a fixed 4:1 species-to-reaction ratio. …”

Prediction accuracy analysis over time steps. by Mohanad Faeq Ali (21354273)

“…The recurrent networks, specifically Long Short Term Memory (LSTM), process data from healthcare devices, identifying abnormal patterns that indicate potential cyberattacks over time. The created system was implemented using Python, and various metrics, including false positive and false negative rates, accuracy, precision, recall, and computational efficiency, were used for evaluation. …”

FPR and FNR analysis based on different time steps. by Mohanad Faeq Ali (21354273)