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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
Published 2022“…Here we describe pyAscore, an efficient and versatile implementation of the Ascore algorithm in Python for scoring the localization of user defined PTMs in data dependent mass spectrometry. pyAscore can be used from the command line or imported into Python scripts and accepts standard file formats from popular software tools used in bottom-up proteomics. …”
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Global Aridity Index and Potential Evapotranspiration Climate Database v3.1 - Algorithm Code (Python)
Published 2025“…<p dir="ltr">The custom code in Python programming language used to develop the <b>Global Aridity Index and Potential Evapotranspiration (ET0) Climate Database v3.…”
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PyRates—A Python framework for rate-based neural simulations
Published 2019“…A basic requirement for computational modeling studies is the availability of efficient software for setting up models and performing numerical simulations. While many such tools exist for different families of neural models, there is a lack of tools allowing for both a generic model definition and efficiently parallelized simulations. …”
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Table_1_An application programming interface implementing Bayesian approaches for evaluating effect of time-varying treatment with R and Python.pdf
Published 2023“…Introduction<p>Methods and tools evaluating treatment effect have been primarily developed for binary type of treatment. …”
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PySHS: Python Open Source Software for Second Harmonic Scattering
Published 2020“…The PySHS package is a new python open source software tool which simulates the second harmonic scattering (SHS) of different kinds of colloidal nano-objects in various experimental configurations. …”
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Parallel scalable simulations of biological neural networks using TensorFlow: A beginner's guide
Published 2022“…TensorFlow is a Python-based open-source package designed for machine learning algorithms. …”
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Numerical data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability"
Published 2025“…<p dir="ltr">This data set contains the data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability". …”
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Table_2_XCast: A python climate forecasting toolkit.docx
Published 2022“…Heavy data preprocessing is needed: gridded data must be aggregated, reshaped, or reduced in dimensionality in order to fit the strict formatting requirements of Python's data science tools. Efficiently implementing this gridpoint-wise workflow is a time-consuming logistical burden which presents a high barrier to entry to earth data science. …”