Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…The pipeline integrates established open-source tools (fastp, BWA-MEM, samtools, iVar, bcftools) and implements <b>codon-aware mutation calling</b> at five canonical RBD positions (R346, S371, K444, F456, F486) relative to NC_045512.2. …”

Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds by Gloria Castañeda-Valencia (20758502)

“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”

Missing Value Imputation in Relational Data Using Variational Inference by Simon Fontaine (7046618)

“…Additional results, implementation details, a Python implementation, and the code reproducing the results are available online. …”

Spotted owl habitat quality maps and disturbance attribution analysis by Josh Barry (7573823)

“…<p dir="ltr">This dataset includes annual spatial maps of spotted owl nesting habitat quality in Southern California and an accompanying ArcPython script used to attribute negative annual habitat change to wildfire (Barry et al., 2025). …”

Advancing Solar Magnetic Field Modeling by Carlos António (21257432)

“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”

kececilayout by Mehmet Keçeci (14301782)

“…<p dir="ltr"><b>Kececi Layout (Keçeci Yerleşimi)</b>: A deterministic graph layout algorithm designed for visualizing linear or sequential structures with a characteristic "zig-zag" or "serpentine" pattern.</p><p dir="ltr"><i>Python implementation of the Keçeci layout algorithm for graph visualization.…”

Data and software for "Social networks affect redistribution decisions and polarization" by Milena Tsvetkova (11217969)

“…</p><p dir="ltr">The repository contains data in .csv and .xlsx format, model code in .nlogox Netlogo format, analysis code in .ipynb Jupyter notebooks, and helping code in .py Python files.…”

RabbitSketch by tong zhang (20852432)

“…RabbitSketch achieves significant speedups compared to existing implementations, ranging from 2.30x to 49.55x.In addition, we provide flexible and easy-to-use interfaces for both Python and C++. …”

Keyhole Imagery Global Coverage Dataset (1960–1984) by Hao Li (20223762)

“…</li><li><b>Code</b>: Python scripts implementing the three-step workflow (imagery classification, global grid generation, and point-based property calculation).…”

Recursive generation of substructures using point data by Jackie R (18359715)

“…<p dir="ltr">The dataset contains generated substructure using POI in China, the pseudo code for the algorithm and python implement of the algorithm. …”

Demonstration of Isosteric Heat of Adsorption Calculation using AIFs and pyGAPs by Jack Evans (11275386)

“…</p><p dir="ltr">The calculation is performed using the Clausius-Clapeyron method as implemented in the <code><strong>pyGAPS</strong></code> Python library for adsorption science. …”

<b>Testing AI Applications Under Nondeterminism, Drift, and Resource Constraints</b> by Nariman Mani (21380459)

“…<ul><li>A <b>Python repo</b> with minimal implementations of all five layers<br>(<b>COL</b>, <b>SCL</b>, <b>CDM</b>, <b>RPE</b>, <b>RAS</b>) plus an <b>orchestrator</b> and utilities.…”

Table & Figure.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …”

Raw Data EEG.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …”

Online Resource: Reservoir Computing as a Promising Approach for False Data Injection Attack Detection in Smart Grids by Carl-Hendrik Peters (21530624)

“…</li><li><b>3_literature_analysis_and_mapping.ipynb</b><br>Contains the Python code used for executing the systematic mapping study (SMS), including automated processing of literature data and thematic clustering.…”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …”

Folder with all data and algorithms by Jorge Servert Lerdo de Tejada (22290001)

“…<p dir="ltr">Spatially Offset Raman Spectroscopy (SORS) has emerged as a potential tool for non-invasive biomedical diagnostics, enabling molecularly specific probing of subsurface tissues. …”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…Its efficiency and scalability make it well-suited for early-stage antibody discovery, repertoire profiling, and therapeutic design, particularly in the absence of structural data. The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…”

Concurrent spin squeezing and field tracking with machine learning by Junlei Duan (18393642)

“…<p dir="ltr">The dataset contains:</p><ol><li>Steady_squeezing.zip <b>a)</b> data for steady squeezing data and characteraztion <b>b)</b> data for pulse RF magnetormeter</li><li>Tracking1.zip <b>a)</b> data of OU process for Deep learning <b>b)</b> data of OU-jump process for Deep learning</li><li>Tracking2.zip <b>a)</b> data of white noise process in backaction experiment <b>b) </b>data of white noise process in rearrange experiment</li><li>Code <b>a)</b> Randomly signal generating code <b>b)</b> Deep learning codec.data pre-processing code</li></ol><p dir="ltr">The network is implemented using the torch 1.13.1 framework and CUDA 11.6 on Python 3.8.8. …”

Accompanying data files (Melbourne, Washington DC, Singapore, and NYC-Manhattan) by Winston Yap (13771969)

“…</p><p dir="ltr">Each zipped folder consists the following files:</p><ul><li>Graph data - City object nodes (.parquet) and COO format edges (.txt)</li><li>predictions.txt (model predictions from GraphSAGE model)</li><li>final_energy.parquet (Compiled training and validation building energy data)</li></ul><p dir="ltr">The provided files are supplementary to the code repository which provides Python notebooks stepping through the data preprocessing, GNN training, and satellite imagery download processes. …”