Global Graph Dataset by Winston Yap (13771969)

“…These functionalities have been implemented with the Urbanity python package which provides functionalities for saving, loading, visualising, processing, and converting urban graphs to machine learning friendly formats (PyG and DGL). …”

Data from: Circadian activity predicts breeding phenology in the Asian burying beetle <i>Nicrophorus nepalensis</i> by Hao Chen (20313552)

“…</p><p dir="ltr">The dataset includes:</p><ol><li>Raw locomotor activity measurements (.txt files) with 1-minute resolution</li><li>Breeding experiment data (Pair_breeding.csv) documenting nest IDs, population sources, photoperiod treatments, and breeding success</li><li>Activity measurement metadata (Loc_metadataset.csv) containing detailed experimental parameters and daily activity metrics extracted using tsfresh</li></ol><p dir="ltr">The repository also includes complete analysis pipelines implemented in both Python (3.8.8) and R (4.3.1), featuring:</p><ul><li>Data preprocessing and machine learning model development</li><li>Statistical analyses</li><li>Visualization scripts for generating Shapley plots, activity pattern plots, and other figures</li></ul><p></p>…”

PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation by David Lewis Stewart Parry (22188211)

“…The included Python scripts simulate a low-RAM cosmological oscillator that evolves through successive nonsingular “bounces,” demonstrating a self-consistent cyclic universe in which curvature, tension, and entropy reset in finite, periodic intervals. …”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

“…(NEXRAD), using open-source tools from the Python ecosystem such as Xarray, Xradar, and Dask to enable efficient parallel processing and scalable analysis. …”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

Optimized Bayesian regularization-back propagation neural network using data-driven intrusion detection system in Internet of Things by Ashok Kumar K (21441108)

“…The proposed DIDS-BRBPNN-BBWOA-IoT method is implemented using Python. The performance of the DIDS-BRBPNN-BBWOA-IoT approach is examined using performance metrics like accuracy, precision, recall, f1-score, specificity, error rate; computation time, and ROC. …”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…</p><p dir="ltr">Globus Compute [2] is a Function-as-a-Service platform designed to provide a scalable, secure, and simple interface to HPC resources. Globus Compute implements a federated model via which users may deploy endpoints on arbitrary remote computers, from the edge to high performance computing (HPC) cluster, and they may then invoke Python functions on those endpoints via a reliable cloud-hosted service. …”

Comprehensive Fluid and Gravitational Dynamics Script for General Symbolic Navier-Stokes Calculations and Validation by Stylianos Touloumidis (19938747)

“…It provides a flexible foundation on which theoretical assumptions can be validated, and practical calculations performed. Implemented in Python with symbolic calculations, the script facilitates in-depth analysis of complex flow patterns and makes advanced mathematical computations more accessible. …”

World Heritage documents reveal persistent gaps between climate awareness and local action by Yang Chen (20756166)

“…The analysis section includes a GLM model implemented in R, along with evaluation tools such as correlation heatmaps, ICC agreement analysis, and MCC-based binary classification assessment. …”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Knowledge Graph validation using SHACL Shapes by Ángel Iglesias Préstamo (19745767)

“…Leveraging Rust’s performance and safety features, rudof provides efficient validation tools and Python bindings for integration with data science workflows. …”

OHID-FF dataset for forest fire detection and classification by xin chen (20496938)

“…If you add scripts or tools that change dataset paths or formats, please update `YOLODataset/dataset.yaml` and this README accordingly.…”

Mean Annual Habitat Quality and Its Driving Variables in China (1990–2018) by ChenXi Zhu (21374876)

“…</p><p dir="ltr">(HQ: Habitat Quality; CZ: Climate Zone; FFI: Forest Fragmentation Index; GPP: Gross Primary Productivity; Light: Nighttime Lights; PRE: Mean Annual Precipitation Sum; ASP: Aspect; RAD: Solar Radiation; SLOPE: Slope; TEMP: Mean Annual Temperature; SM: Soil Moisture)</p><p dir="ltr"><br>A Python script used for modeling habitat quality, including mean encoding of the categorical variable climate zone (CZ), multicollinearity testing using Variance Inflation Factor (VIF), and implementation of four machine learning models to predict habitat quality.…”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …”

MSc Personalised Medicine at Ulster University by Steven Watterson (100045)

“…</b> Introducing computational approaches to studying genes, proteins or metabolites, this module teaches Python coding, data analysis and how to work with the databases that support data analysis.…”

Research Database by Ana Paula Fermiano (22439479)

“…</p><p dir="ltr">Statistical analysis was conducted through <b>multiple regression models</b> implemented in <b>Jamovi</b>, supported by Geographic Information System (GIS) tools to visualize spatial patterns. …”

Landscape Change Monitoring System (LCMS) Conterminous United States Cause of Change (Image Service) by U.S. Forest Service (17476914)

“…Scikit-learn: Machine Learning in Python. In Journal of Machine Learning Research (Vol. 12, pp. 2825-2830).Pengra, B. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”