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Finites differences python code to solve CH equation with a source term and Comsol routine to solve Brusselator equation in radial domains.
Published 2025“…<p dir="ltr"><b><i>* Cahn-Hilliard simulations *</i></b><br>Finite difference code implementing the modified Cahn Hilliard equation with a forward Euler scheme and the possibility to parallelize the solver using the numba python library.…”
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42
The format of the electrode csv file
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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The format of the simulation reports
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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The format of the weights file
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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Cost functions implemented in Neuroptimus.
Published 2024“…To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. Neuroptimus also offers several features to support more advanced usage, including the ability to run most algorithms in parallel, which allows it to take advantage of high-performance computing architectures. …”
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code implementing the finite element method and finite difference method from Hybrid PDE-ODE Models for Efficient Simulation of Infection Spread in Epidemiology
Published 2025“…This dataset contains code implementing the finite element method based on Kaskade 7 (C++) and code implementing the finite difference method (Python) for the development of hybrid PDE-ODE models aimed at efficiently simulating infection spread in epidemiology. …”
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Models estimated using ALAAMEE for the Deezer networks, with liking jazz as the outcome variable.
Published 2024Subjects: -
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Type II error rate from estimation of simulated outcomes using the EE algorithm.
Published 2024Subjects: -
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ALAAM models for the Deezer networks, with liking “alternative” music as the outcome variable.
Published 2024Subjects: -
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Type I error rate from estimation of simulated outcomes using the EE algorithm.
Published 2024Subjects: -
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