CpG Signature Profiling and Heatmap Visualization of SARS-CoV Genomes: Tracing the Genomic Divergence From SARS-CoV (2003) to SARS-CoV-2 (2019) حسب Tahir Bhatti (20961974)

"…Heatmap Generation</p><p dir="ltr">Tools :</p><p dir="ltr">Heatmaps were generated using Python's seaborn library (sns.heatmap) and matplotlib for visualization.…"

Dataset for CNN-based Bayesian Calibration of TELEMAC-2D Hydraulic Model حسب Jose Zevallos (21379988)

"…</li><li>Files starting with <code>y_part</code> are flattened output arrays representing corresponding water depth values.…"

Moulin distributions during 2016-2021 on the southwest Greenland Ice Sheet حسب Kang Yang (7323734)

"…</p><p><br></p><ul><li>00_Satellite-derived moulins: Moulins directly mapped from Sentinel-2 imagery, representing actual moulin positions;</li><li>01_Snapped moulins: Moulins snapped to DEM-modeled supraglacial drainage networks, primarily used for analyses;</li><li>02_Moulin recurrences: Recurring moulins determined from the snapped moulins;</li><li>03_Internally drained catchments: Internally drained catchment (IDC) associated with each moulin;</li><li>04_Surface meltwater runoff: surface meltwater runoff calculated from MAR for the study area, elevation bins, and IDCs; </li><li>05_DEM-derived: Topographic features modeled from ArcticDEM, including elevation bins, depressions and drainage networks;</li><li>06_GWR: Variables for conducting geographically weighted regression (GWR) analysis;</li></ul><p><br></p><ul><li>Code_01_Mapping moulins on the southwestern GrIS.ipynb: A Jupyter Notebook to analyze moulin distributions, reproducing most of the analyses and figures presented in the manuscript using the provided datasets;</li><li>Code_02_pre1_calculate Strain Rate from XY ice velocity.py: A preprocessing Python script to calculate strain rate for the GWR analysis;</li><li>Code_02_pre2_calculate Driving Stress from ice thickness and surface slope.py: A preprocessing Python script to calculate driving stress for the GWR analysis;</li><li>Code_02_GWR analysis.ipynb: A Jupyter Notebook to conduct the GWR analysis using the provided datasets.…"

<b>Dataset for manuscript: </b><b>Phylogenetic and genomic insights into the evolution of terpenoid biosynthesis genes in diverse plant lineages</b> حسب Puguang Zhao (19023065)

"…</p><p dir="ltr"> 'boxplot.py': This script is executed in Visual Studio Code, using Python 3.10.4 as the runtime environment.…"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata from Step 1</li><li><code>perception_module/trained_models/</code> - Pre-trained models</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python -m perception_module.pred \<br> --model-weights .…"

MCCN Case Study 3 - Select optimal survey locality حسب Donald Hobern (21435904)

"…</p><p dir="ltr">This is a simple implementation that uses four environmental attributes imported for all Australia (or a subset like NSW) at a moderate grid scale:</p><ol><li>Digital soil maps for key soil properties over New South Wales, version 2.0 - SEED - see <a href="https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html" target="_blank">https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html</a></li><li>ANUCLIM Annual Mean Rainfall raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer</a></li><li>ANUCLIM Annual Mean Temperature raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer</a></li></ol><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Generate STAC metadata for layers from predefined configuratiion</li><li>Load data cube and exclude nodata values</li><li>Scale all variables to a 0.0-1.0 range</li><li>Select four layers for comparison (soil organic carbon 0-30 cm, soil pH 0-30 cm, mean annual rainfall, mean annual temperature)</li><li>Select 10 random points within NSW</li><li>Generate 10 new layers representing standardised environmental distance between one of the selected points and all other points in NSW</li><li>For every point in NSW, find the lowest environmental distance to any of the selected points</li><li>Select the point in NSW that has the highest value for the lowest environmental distance to any selected point - this is the most different point</li><li>Clean up and save results to RO-Crate</li></ol><p><br></p>…"

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) حسب Tahir Bhatti (20961974)

"…Full source code and version details are available upon request.…"

Attention and Cognitive Workload حسب Rui Varandas (11900993)

"…</p><p dir="ltr">The data for subject 2 do not include the 2nd part of the acquisition (python task) because the equipment stopped acquiring; subject 3 has the 1st (N-Back task and mental subtraction) and the 2nd part (python tutorial) together in the <code>First part</code> folder (file <code>D1_S3_PB_description.json</code> indicates the start and end of each task); subject 4 only has the mental subtraction task in the 1st part acquisition and in subject 8, the subtraction task data is included in the 2nd part acquisition, along with python task.…"

Audio Datasets of belt conveyor rollers in mines حسب Juan Liu (19687435)

"…</li><li><b>Python Code: </b>This code validates the accuracy and usability of the audio feature datasets in real-time monitoring of belt conveyor roller operational states.…"

GeoGraphNetworks: Shapefile-Derived Datasets for Accurate and Scalable Graphical Representations حسب Harish Sharma (18881935)

"…The rail line infrastructure of the USA is represented as a single network that covers the entire country and includes connectivity to Canada. …"

Advancing Solar Magnetic Field Modeling حسب Carlos António (21257432)

"…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …"

Social media images of China's terraces حسب Song Chen (19488280)

"…Geo-tagged images were collected using Weibo cookies and Python-based scraping tools (available at: https://github.com/dataabc/weibo-search). …"

Physiotherapist-Assisted Wrist Movement Protocol for EEG-Based Corticokinematic Coherence Assessment حسب Fanni Kovács (21733838)

"…</li></ol><h4><b>Movement File Structure</b></h4><p dir="ltr">Each entry contains:</p><ul><li><code><strong>time</strong></code>: a 32-bit unsigned integer indicating the timestamp in milliseconds,</li><li><code><strong>x</strong></code>, <code><strong>y</strong></code>, <code><strong>z</strong></code>: 16-bit signed integers representing acceleration along the respective axes,</li><li><code><strong>trigger</strong></code>: an 8-bit unsigned integer used to mark event-related triggers for synchronization with the EEG data (e.g., movement onset).…"

Cognitive Fatigue حسب Rui Varandas (11900993)

"…<br></p><p dir="ltr"><b>HCI features</b> encompass keyboard, mouse, and screenshot data. Below is a Python code snippet for extracting screenshot files from the screenshots CSV file.…"

Multisession fNIRS-EEG data of Post-Stroke Motor Recovery: Recordings During Intact and Paretic Hand Movements حسب Aleksandra Medvedeva (21221383)

"…The fNIRS .snirf files are accompanied by event files as .txt tables, containing arrays of event timestamps and corresponding event codes. The code for signal reading, preprocessing, and epoching is provided with the dataset in the “Preprocessing” file. …"

Digital Twin for Chemical Sciences حسب Jin Qian (19339035)

"…The procedure for generating data in Figure 3 can be found in the demo notebook in Supplementary Code. The procedure for generating data of Figure 4 has been uploaded in fig4_figshare.zip file. …"

Sonification of Warming Stripes حسب Christopher Harrison (9448751)

"…The sonification was produced using the STRAUSS sonification Python package.</p><p dir="ltr">Here we release:<br>1. …"

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx حسب Piyachat Udomwong (22563212)

"…The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…"

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" حسب Leonardo Uieda (97471)

"…</p><h2>License</h2><p dir="ltr">All Python source code (including <code>.py</code> and <code>.ipynb</code> files) is made available under the MIT license. …"

Sonification of Growing Black Hole حسب Rose Shepherd (20328444)

"…We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …"