data for PONE-D-25-41664 حسب Ying Song (22646597)

"…Software Requirements</p><p dir="ltr">This dataset is provided in .xlsx format and can be opened with:</p><p><br></p><p dir="ltr">Statistical software: R, Stata, Python (pandas)</p><p dir="ltr">Spreadsheet programs: Microsoft Excel, Google Sheets, LibreOffice Calc</p><p><br></p><p dir="ltr">8. …"

Datasets حسب Rishabh Das (20960957)

"…The Python program also randomly opens and closes the valve. …"

Java code instrumentation - - chapter 7 of the book "Software Testing Automation" by Saeed Parsa. حسب Saeed Parsa (13893726)

"…</p> <p><br></p> <p>  </p> <h2>Example</h2> <p>The purpose of instrumenting Java code is to log the execution path when executing the code. Below, we will use ANTLR in the Python environment to instrument Java code. …"

<b>MAPLES-DR: </b>MESSIDOR Anatomical and Pathological Labels for Explainable Screening of Diabetic Retinopathy حسب Gabriel Lepetit-Aimon (13889817)

"…For more specific instructions see <a href="https://liv4d.github.io/MAPLES-DR/en/welcome/messidor.html" target="_blank"><u>Using MESSIDOR images</u></a>.</p><p dir="ltr">To ease the integration of the two datasets we published a Python package named <a href="https://github.com/LIV4D/MAPLES-DR" target="_blank"><u>maples_dr</u></a> that automates MAPLES-DR download, matching with MESSIDOR images, cropping and resizing to a uniform image resolution. …"

Expanding Adverse Outcome Pathway knowledge by creating AOP-Wiki RDF with semantic annotations to facilitate risk assessment of chemicals. حسب Marvin Martens (4338253)

"…These annotations are used to create Internationalized Resource Identifiers.…"

#GlobalCollembola: site-level database and analyses حسب Anton Potapov (7865150)

"…Four files are attached:</p> <p>1) GCdatabase_sites.csv - site-level database structured for path analysis</p> <p>2) Rcode_PathAnalysis - markdown pdf with the R code for path analysis</p> <p>3) 20210527_collembola_sampled.csv - site-level database structured for geospatial modelling</p> <p>4) 20210630_collembola_pipeline.py - the Python code for geospatial modelling</p> <p>4) #GCdatabase Events - sampling even database used for additional analysis (accounting for the sampling year and months)</p>…"

Automatically Generated Chemical KG حسب Connor Oryan (19851477)

"…The files are in JSON format and are intended to be loaded within Python as dictionaries. The <i>Full_SSKG.json </i>file is approximately 11GB in size when extracted. …"

Image_1_Innovative breakthroughs facilitated by single-cell multi-omics: manipulating natural killer cell functionality correlates with a novel subcategory of melanoma cells.tif حسب Zhijie Zhao (686645)

"…InferCNV was utilized to calculate the CNV level of melanoma cell subtypes. Python package pySCENIC was used to assess the enrichment of transcription factors and the activity of regulons in melanoma cell subtypes. …"

Image_2_Innovative breakthroughs facilitated by single-cell multi-omics: manipulating natural killer cell functionality correlates with a novel subcategory of melanoma cells.tif حسب Zhijie Zhao (686645)

"…InferCNV was utilized to calculate the CNV level of melanoma cell subtypes. Python package pySCENIC was used to assess the enrichment of transcription factors and the activity of regulons in melanoma cell subtypes. …"

Table_1_Innovative breakthroughs facilitated by single-cell multi-omics: manipulating natural killer cell functionality correlates with a novel subcategory of melanoma cells.docx حسب Zhijie Zhao (686645)

"…InferCNV was utilized to calculate the CNV level of melanoma cell subtypes. Python package pySCENIC was used to assess the enrichment of transcription factors and the activity of regulons in melanoma cell subtypes. …"

Globus Automate: A Distributed Research Automation Platform حسب Ryan Chard (6681857)

"…Introducing Parsl: A Python Parallel Scripting Library, August 2017. </div><div>[3] E. …"

100-m resolution Age-Stratified Population Estimation from the 2020 China Census by Township (ASPECT) حسب Yang Ju (12472821)

"…Once uncompressed, the GEOTIFF files can processed by GIS software such as ArcGIS, and by programing language packages such as Rasterio in Python.…"

Decoding fairness motivations - repository حسب Sebastian Speer (6489207)

"…</div><div>These data and ROIs were used in following paper:</div><div>S.P.H. Speer & M.A.S. …"

Sorting real-time fluorescence and deformability cytometry (soRT-FDC) - manuscript data حسب Ahmad Ahsan Nawaz (8065329)

"…</p><p>The '*.rtdc' files are HDF5 files and can be analysed using a Python library called dclab [4], or a software called Shape-Out [5]. …"

<b>Visium spatial transcriptomics data for individual oral squamous cell carcinoma (OSCC) patients</b> حسب Ken Furudate (13018584)

"…</li><li>Supplementary spatial metadata components (pickled Python objects) for use with the integrated AnnData object are available at Figshare (<a href="https://doi.org/10.6084/m9.figshare.20408067" rel="noopener" target="_blank">https://doi.org/10.6084/m9.figshare.20408067</a>).…"

MO-DM (Motivation-Oriented Decision-Making) V2 حسب Alvaro Magnum Barbosa Neto (12860543)

"…</p><p dir="ltr">Considering, as an example, a common and trivial decision: which programming language will be used in the project?</p><p dir="ltr">Each student will evaluate the possible options (Java, C#, Python, C, Java Script) by assigning one to six stars for each EVC dimension. …"

Data for Messager et al. 2020 STOTEN - Low-cost biomonitoring and high-resolution, scalable models of urban metal pollution حسب Mathis Messager (9917610)

"…</div><div></div><div>- Mercator_1SP.prj</div><div>Reference projection file for Web Mercator used by Bing</div><div><br></div><div>- congestionPS.tif (94001x84002 pixels, 1 band, 4.7773143 m resolution, signed integer 32 Bit pixel depth, NoData Value 65536, compression LZW, projection Mercator_1SP, linear unit 1 meter)</div><div>Formatted raster of Bing congestion index for the Puget Sound (PS) watershed based on Bing™ Maps REST Services Application Programming Interface (API)</div><div>The congestion conditions across the study area were downloaded Bing Traffic hourly from from November 28th 2018 at 08:00 am to December 5th 2018 at 08:00, </div><div>depicted based by color and translated as follows - blank:0, green:1, yellow:2, orange:3, red:4 </div><div>All hourly snapshots were then averaged, multiplied by 1000, and converted to integer</div><div><br></div><div>- transitPS.tif (48066x46464 pixels, 1 band. 4.7773143 m resolution, unsigned integer 32 Bit pixel depth, NoData Value 2147483647, compression LZW, datum WGS 84, projection Albers Conical Equal Area)</div><div>Formatted raster depicting ten times (10*)the weekly number of overground transit vehicles passing by each pixel.…"

Peptide Conformers Dataset - PeptideCs حسب Tadeáš Kalvoda (12429976)

"…This combination of semiempirical geometry optimization and DFT single point calculations has been previously used to <a href="http://doi.org/10.1021/acs.jpcb.0c09251" target="_blank">describe the potential energy surface of peptides</a>.…"

Accelerating cancer immunotherapy research with the CRI iAtlas data resource and web portal حسب David Gibbs (11014707)

"…</li><li>wesm/feather: Feather: fast, interoperable binary data frame storage for Python, R, and more powered by Apache Arrow. https://github.com/wesm/feather.…"

Cerebellum cell type collaboration database حسب Maxime Beau (7092260)

"…url=https://en.wikipedia.org/wiki/Hierarchical_Data_Format&data=05|02|christine.buckley@ucl.ac.uk|38143a9b01cd4bf12d3608dd5a5ed511|1faf88fea9984c5b93c9210a11d9a5c2|0|0|638766085530777814|Unknown|TWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ==|0|||&sdata=un5vN2R7ugo2Fv43yXXJKZep9Q2Jlyck9+gN5Pm3Qt0=&reserved=0" target="_blank">Hdf5</a> files can be easily opened with Python, MATLAB and many other programming languages.…"