Table1_Benchmarking microbial DNA enrichment protocols from human intestinal biopsies.XLSX by Dmitrij Marchukov (15356863)

“…However, ONT AS resulted in relevant shifts in the observed bacterial abundance, including 2 to 5 times more Escherichia coli reads. Furthermore, a modest enrichment of Bacteroides fragilis and Bacteroides thetaiotaomicron was also observed with AS. …”

Assessment of the Severity of Paravalvular Regurgitation and its Role on Survival After Transcatheter Aortic Valve Replacement by Anna Sannino (338344)

“…PVR was also graded as a composite score (PVR score), based on 6 commonly used metrics. …”

Presentation1_Cinnamomum zeylanicum Extract and its Bioactive Component Cinnamaldehyde Show Anti-Tumor Effects via Inhibition of Multiple Cellular Pathways.ppt by Sadhna Aggarwal (12718319)

“…The cancer cells showed a decreased expression of various PI3k-AKT-mTOR pathways related to VEGF, COX-2, Bcl-2, NF-κB, and proteins post-treatment.…”

Parameter Settings. by Yutong Liu (4027994)

“…The average edit distance decreases from 3.2 to 2.5, the BLEU score increases from 0.65 to 0.72, and the average processing time is reduced from 2.3 seconds to 1.8 seconds. …”

Image_1_Aberrant expression of bone morphogenetic proteins in the disease progression and metastasis of breast cancer.tif by Ming Liu (105953)

“…BMPs also play dual roles in tumour growth and metastasis of BC.</p>Conclusion<p>A shift pattern of BMPs was showed in different subtypes of breast cancer suggesting a subtype specific involvement. …”

DataSheet_1_Single-Cell RNA Sequencing Reveals the Immunological Profiles of Renal Allograft Rejection in Mice.pdf by Qixia Shen (11170275)

“…Both B cells and neutrophils decreased by about 3 folds. On the contrary, the proportion of macrophages and dendritic cells (DCs) increased significantly, especially by about a 4.5-fold increase in Ly6c^loMrc1⁺ macrophages and 2.6 folds increase in Ly6c^loEar2⁺ macrophages. …”

Data_Sheet_1_The Temporal Dynamics of EEG Microstate Reveals the Neuromodulation Effect of Acupuncture With Deqi.pdf by Xiaopeng Si (11276703)

“…Results showed that: (1) compared with tactile controls, acupuncture manipulation caused significantly increased deqi behavioral scores. (2) Acupuncture manipulation significantly increased the duration, occurrence, and contribution parameters of microstate C, whereas it decreased those parameters of microstate D. (3) Microstate C’s duration parameter showed a significantly positive correlation with acupuncture deqi behavior scores. (4) Acupuncture manipulation significantly increased the transition probabilities with microstate C as node, whereas it reduced the transition probabilities with microstate D as node. (5) Microstate B→C’s transition probability also showed a significantly positive correlation with acupuncture deqi behavior scores. …”

Comparison with Advanced Models. by Yutong Liu (4027994)

“…The average edit distance decreases from 3.2 to 2.5, the BLEU score increases from 0.65 to 0.72, and the average processing time is reduced from 2.3 seconds to 1.8 seconds. …”

Live Imaging of Label-Free Graphene Oxide Reveals Critical Factors Causing Oxidative-Stress-Mediated Cellular Responses by Sandra Vranic (4810767)

“…The interest in graphene and its translation into commercial products has been expanding at a high pace. Based on previously described pulmonary safety concerns for carbon nanomaterials, there is a great need to define parameters guiding interactions between graphene-based materials and the pulmonary system. …”

Table_1_Plasma protein profiling reveals dynamic immunomodulatory changes in multiple sclerosis patients during pregnancy.xlsx by Georgia Papapavlou Lingehed (13174338)

“…Pregnancy represents a natural modulation of the disease course, where the relapse rate decreases, especially in the 3^rd trimester, followed by a transient exacerbation after delivery. …”

Data Sheet 1_Effects of low-temperature stress during rice heading stage on carbon and nitrogen allocation in paddy eco-system of northeastern China.docx by Tao Sun (91038)

“…</p>Results and Discussion<p>Low-temperature stress significantly reduced rice grain yield of JN809 (sensitive to low-temperature stress) and J88 (tolerant to low-temperature stress) varieties by 27.6% and 21.4%, respectively, This stress tendency increased C and N accumulation in rice stems and leaves, while concurrently decreasing C and N accumulation in panicles. Specifically, under low-temperature stress, the ¹³C isotope content in stems and leaves was found to be 14.0% and 19.0% higher than in the control treatment, while the ¹³C and ¹⁵N isotope contents in their panicles were 29.3% and 22.5% lower, respectively. …”

S1 Dataset - by Tzu-Hui Pao (8504268)

“…The patients with a baseline LN volume > 7.7 ml had a significantly worse median OS compared to those with smaller LN volume (18.8 vs. 46.9 months, p = 0.049), as did those with tumor regression grade (TRG) 3–5 after CCRT (13.9 vs. 86.7 months, p < 0.001). …”

Image3_Integrative analysis of the role of BOLA2B in human pan-cancer.TIF by Mingxing Liang (11361621)

“…Post-transcriptional modifications, including m5C, m1A, and m6A, were observed to regulate BOLA2B expression in all cancers. …”

Intragenic <i>ERG</i> Deletions Do Not Explain the Biology of <i>ERG</i>-Related Acute Lymphoblastic Leukemia by Eliska Potuckova (525220)

“…They represent the only genetic lesion described so far present in the majority of cases clustering into a subgroup of B-other subtype characterized by a unique gene expression profile, probably sharing a common, however, not yet fully described, biological background. …”

Table3_Benchmarking microbial DNA enrichment protocols from human intestinal biopsies.XLSX by Dmitrij Marchukov (15356863)

“…However, ONT AS resulted in relevant shifts in the observed bacterial abundance, including 2 to 5 times more Escherichia coli reads. Furthermore, a modest enrichment of Bacteroides fragilis and Bacteroides thetaiotaomicron was also observed with AS. …”

Data_Sheet_2_Phylogeographic Assessment Reveals Geographic Sources of HIV-1 Dissemination Among Men Who Have Sex With Men in Kenya.docx by George M. Nduva (12216416)

“…Maximum-likelihood (ML) phylogenetics and Bayesian inference were used to determine HIV-1 clusters, evolutionary dynamics, and virus migration rates between geographic regions. HIV-1 sub-subtype A1 (72.0%) was most common followed by subtype D (11.0%), unique recombinant forms (8.9%), subtype C (5.9%), CRF 21A2D (0.8%), subtype G (0.8%), CRF 16A2D (0.3%), and subtype B (0.3%). …”

Increased water intake reduces long-term renal and cardiovascular disease progression in experimental polycystic kidney disease by Priyanka S. Sagar (6169736)

“…Increasing water intake reduces renal cyst growth in the <i>pck</i> rat (a genetic ortholog of autosomal recessive PKD) but it is not clear if this beneficial effect is present in other models of PKD. …”

Controlling the Rigidity of Kinesin-Propelled Microtubules in an <i>In Vitro</i> Gliding Assay Using the Deep-Sea Osmolyte Trimethylamine <i>N</i>‑Oxide by Arif Md. Rashedul Kabir (7513523)

“…By varying the concentration of TMAO in the gliding assay, the rigidity of microtubules can be modulated over a wide range. Based on this strategy, we are able to reduce the persistence length of microtubules, a measure of microtubule rigidity, ∼8 fold by using TMAO at the concentration of 1.5 M. …”

Oriental Medicine Kyung-Ok-Ko Prevents and Alleviates Dehydroepiandrosterone-Induced Polycystic Ovarian Syndrome in Rats by Minhee Jang (521313)

“…We investigated whether pre-administration (daily from 2 hours before PCOS induction) and post-administration (daily after induction of PCOS) of KOK (0.5, 1.0, and 2.0 g/kg/day, p.o.) could have a protective effect in a dehydroepiandrosterone (DHEA, s.c.)…”

Data_Sheet_2_Characterizing the Neural Correlates of Response Inhibition and Error Processing in Children With Symptoms of Irritability and/or Attention-Deficit/Hyperactivity Disor... by Ka Shu Lee (12195038)

“…This study first classified a large sample of youths in the Adolescent Brain Cognitive Development (ABCD) study at baseline into distinct phenotypic groups based on ADHD and irritability symptoms (N = 11,748), and then examined shared and non-shared neural correlates of response inhibition and error processing during the Stop Signal Task in a subset of sample with quality neuroimaging data (N = 5,948). …”