Data_Sheet_1_The structure and function of rhizosphere bacterial communities: impact of chemical vs. bio-organic fertilizers on root disease, quality, and yield of Codonopsis pilos... by Bin Huang (331329)

“…</p>Results and discussion<p>Compared to CFs, the emergence rate and yield in BOF treatments were increased by 21.12 and 33.65%, respectively, and the ash content, water content, and disease index in the BOF treatments were decreased by 17.87, 8.19, and 76.60%, respectively. …”

Data_Sheet_1_CT Derived Hounsfield Unit: An Easy Way to Determine Osteoporosis and Radiation Related Fracture Risk in Irradiated Patients.docx by Gokhan Yaprak (8830763)

“…<p>Background: We aimed to evaluate osteoporosis, bone mineral density, and fracture risk in irradiated patients by computerized tomography derived Hounsfield Units (HUs) calculated from radiation treatment planning system.…”

Proteomic Analysis of the Oil Palm Fruit Mesocarp Reveals Elevated Oxidative Phosphorylation Activity is Critical for Increased Storage Oil Production by Hendrick Loei (1892431)

“…To identify the proteome changes during oil palm fruit maturation and factors affecting oil yield in oil palm fruits, we examined the proteomic profiles of oil palm mesocarps at four developing stages – 12, 16, 18, and 22 weeks after pollination – by 8-plex iTRAQ labeling coupled to 2D-LC and MALDI-TOF/TOF MS. …”

Table1_Methyl 6-O-cinnamoyl-α-d-glucopyranoside Ameliorates Acute Liver Injury by Inhibiting Oxidative Stress Through the Activation of Nrf2 Signaling Pathway.DOCX by Qianqian Xu (731060)

“…MCGP also enhanced the number of PCNA-positive hepatocytes, increased hepatic PCNA and Bcl-XL, and decreased BAX expression in APAP-/CCl₄-intoxicated mice. …”

Image_1_QTL mapping and transcriptome analysis of sugar content during fruit ripening of Pyrus pyrifolia.png by Shuang Jiang (1443706)

“…Two QTLs (qSugar-LG6-Chr7 and qSugar-LG12-Chr3) were identified based on their total sugar contents. …”

Image_1_A Metastasis-Related lncRNA Signature Correlates With the Prognosis in Clear Cell Renal Cell Carcinoma.tif by Qian Dou (3688855)

“…Knocking down SSR3-6 decreased the ability of migration and invasion in ccRCC cells. …”

Image_2_Behavioral and biochemical effects of alcohol withdrawal in female C3H/HeNRj and C57BL/6JRj mice.TIF by Simone Tonetto (14667461)

“…</p>Methods<p>Female C3H and B6 mice (n = 12 per group/strain) were intermittently exposed to alcohol-containing or control liquid diets for 3 weeks. …”

Image_2_Effect of Caloric Restriction on the in vivo Functional Properties of Aging Microglia.TIF by Maria Olmedillas del Moral (8771954)

“…The 6–12 months long caloric restriction (70% of ad libitum food intake) counteracted these aging-induced changes shifting many but not all functional properties of microglia toward a younger phenotype. …”

Data_Sheet_1_Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation.docx by Jie Zhou (28945)

“…Men who have sex with men (MSM) are very likely to be an independent influencing factor of the gut microbiome, but relevant research is still lacking.</p><p>Methods: We conducted a meta-analysis by screening 12 published studies of 16S rRNA gene amplicon sequencing of gut microbiomes related to HIV/AIDS (six of these studies contain data that is relevant and available to MSM) from NCBI and EBI databases. …”

Expression of <em>Ccl11</em> Associates with Immune Response Modulation and Protection against Neuroinflammation in Rats by Milena Z. Adzemovic (150933)

“…Moreover, the homologous chemokine cluster in humans showed evidence of association with susceptibility to MS. We here established a congenic rat strain with <em>Eae18b</em> locus containing a chemokine cluster (<em>Ccl2, Ccl7, Ccl11, Ccl12</em> and <em>Ccl1</em>) from the EAE- resistant PVG rat strain on the susceptible DA background and utilized myelin oligodendrocyte glycoprotein (MOG)-induced EAE to characterize the mechanisms underlying the genetic regulation. …”

Image 1_Tumor-associated bacteria activate PRDX1-driven glycolysis to promote immune evasion and PD-1 antibody resistance in hepatocellular carcinoma.jpeg by Heng Zhang (320479)

“…This study investigates the mechanisms by which bacterial infection reshapes tumor metabolism to undermine the efficacy of anti-PD-1 therapy.</p>Methods<p>We conducted 16S rRNA gene sequencing on 29 HCC clinical samples and integrated the data with single-cell RNA sequencing of 12,487 cells to map microbial, metabolic, and immune interactions within the tumor microenvironment. …”

Table_3_A Metastasis-Related lncRNA Signature Correlates With the Prognosis in Clear Cell Renal Cell Carcinoma.xlsx by Qian Dou (3688855)

“…Knocking down SSR3-6 decreased the ability of migration and invasion in ccRCC cells. …”

mRNA expression profiles of BMAL1 targets. by Guillaume Rey (40799)

“…The sites are ranked according to their strength, and the fraction of robustly circadian mRNA patterns (Fisher test, <i>p</i><0.05; see <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000595#s4" target="_blank">Materials and Methods</a>) among the top <i>x</i> sites is shown. This fraction decreases from 100% among the top 10 sites to 29% for all sites, and this proportion is practically unchanged (31%) if we restrict our analysis to only rhythmic BMAL1 sites. …”

Data_Sheet_1_Peri-interventional Triple Therapy With Dabigatran Improves Vasomotion and Promotes Endothelialization in Porcine Coronary Stenting Model.docx by Rayyan Hemetsberger (5056196)

“…<p>Objective: We evaluated the short and long-term effect of peri-interventional dabigatran therapy on vasomotion, endothelialization, and neointimal formation in a porcine coronary artery stenting model.…”

Table_1_Refractory Ileal Perforations in a Cytomegalovirus-Infected Premature Neonate Resolved After Ganciclovir Therapy.docx by Mari Morimoto (9118313)

“…A 6-week course of intravenous ganciclovir (12 mg/kg/day) was started at DOL34 and then symptoms resolved along with decreasing blood CMV-DNA. …”

image_1.PDF by Renate Richardus (5054798)

“…However, this local hyper-immune reactivity cannot be predicted before vaccination, nor is its association with protection against leprosy known. In this study we investigated the occurrence of adverse events after BCG (re)vaccination in contacts of leprosy patients and analyzed whether the concomitant systemic anti-mycobacterial immunity was associated with these skin manifestations.…”

Adjunct antibody administration with standard treatment reduces relapse rates in a murine tuberculosis model of necrotic granulomas by Alvaro A. Ordonez (2880218)

“…<div><p>Matrix metalloproteinase (MMP)-9 is a zinc-dependent protease associated with early immune responses to <i>Mycobacterium tuberculosis</i> infection, macrophage recruitment and granuloma formation. We evaluated whether adjunctive inhibition of MMP-9 could improve the response to standard TB treatment in a mouse model that develops necrotic lesions. …”

Table 1_Serum cytokine profiles at near term-equivalent age and their association with neurodevelopmental outcomes in preterm infants: an exploratory study.docx by Yan-Jun Wu (22135186)

“…Neurodevelopment was assessed at 12 months’ corrected age using standardized tools (BSID-III). …”

Image 4_Tumor-associated bacteria activate PRDX1-driven glycolysis to promote immune evasion and PD-1 antibody resistance in hepatocellular carcinoma.jpeg by Heng Zhang (320479)

“…This study investigates the mechanisms by which bacterial infection reshapes tumor metabolism to undermine the efficacy of anti-PD-1 therapy.</p>Methods<p>We conducted 16S rRNA gene sequencing on 29 HCC clinical samples and integrated the data with single-cell RNA sequencing of 12,487 cells to map microbial, metabolic, and immune interactions within the tumor microenvironment. …”

Table 1_Global burden of anemia attributed to chronic kidney disease: prevalence, years lived with disability, and predictions to 2035 (Global burden of disease 2021).docx by Wenshuai Zheng (21641225)

“…The global age-standardized prevalence rate (ASPR) and YLD rate per 100,000 were 762.12 (95% UI: 707.32 to 817.37) and 20.34 (95% UI: 13.54 to 29.09) in 2021, which decreased by 9.39 and 18.93% in comparison with those in 1990. …”