Comparison of different classifiers with varying amounts of missing data. by Mallory Sheth (6477662)

“…An expanded version of Table 6 including confidence intervals and results for 5–25% missing data is available in the <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0223161#pone.0223161.s001" target="_blank">S1 Table</a>.…”

Decitabine promotes efficient erythroid differentiation from transduced CD34⁺ cells. by Naoya Uchida (267792)

“…<p>(a) To evaluate decitabine effects on erythroid differentiation and transduction efficiency, we transduced human CD34⁺ cells with a GFP-expressing HIV-1 vector following 48-hour prestimulation with 0.5 µM decitabine. …”

DataSheet1_Development of an inexpensive 3D clinostat and comparison with other microgravity simulators using Mycobacterium marinum.XLSX by Joseph L. Clary (14021733)

“…Mycobacterium marinum was selected for biological comparison experiments as this bacterium can grow as a biofilm or a planktonic culture. Biofilm experiments revealed that the RPM 2.0 and the 3D clinostat with I = 1.5 rpm and O = 3.825 rpm produced similar structures in attached biofilm, and similar changes in transcriptome for the bacteria in suspension compared to the normal gravity transcriptome. …”

Table 2_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.xlsx by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”

DataSheet2_Development of an inexpensive 3D clinostat and comparison with other microgravity simulators using Mycobacterium marinum.PDF by Joseph L. Clary (14021733)

“…Mycobacterium marinum was selected for biological comparison experiments as this bacterium can grow as a biofilm or a planktonic culture. Biofilm experiments revealed that the RPM 2.0 and the 3D clinostat with I = 1.5 rpm and O = 3.825 rpm produced similar structures in attached biofilm, and similar changes in transcriptome for the bacteria in suspension compared to the normal gravity transcriptome. …”

Table_1_Organomineral Fertilizer Is an Agronomic Efficient Alternative for Poultry Litter Phosphorus Recycling in an Acidic Ferralsol.XLSX by Vinicius de Melo Benites (12555682)

“…Over time, the available soil P increased with the highest P dose and decreased in the control treatment. The intermediate dose of 40 kg ha⁻¹ P₂O₅ was enough to keep soil P level and lead to high soybean grain yield over the time, suggesting that the rate of applied P close to the P exportation by the grains has a long-term sustainable effect even in tropical soils, where residual P stocks are used. …”

DataSheet1_Bioactive α-Pyrone Derivatives from the Endophytic Fungus Diaporthe sp. CB10100 as Inducible Nitric Oxide Synthase Inhibitors.PDF by Hong Pu (5449697)

“…In the current study, five new compounds, including a dibenzo-α- pyrone derivative ellagic acid B (5) and four α-pyrones diaporpyrone A–D (9–12), together with three known compounds (6–8), were isolated from the endophytic fungus Diaporthe sp. …”

Table 4_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.xlsx by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”

Data Sheet 2_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.pdf by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”

Image_2_Clinical predictive value of naïve and memory T cells in advanced NSCLC.tif by Guan Zhang (603136)

“…The percentage of CD4⁺ naïve T (Tn), CD8⁺ Tn, CD8⁺ T memory stem cell (Tscm), and CD8⁺ terminal effector T cell decreased obviously. Still, all AC of Tn/Tm of aNSCLCs was significantly lower compared to NCs. …”

Data Sheet 1_Integrated physiological, transcriptomic, and metabolomic analyses of Chrysanthemum ‘Boju’ under excessive indole-3-acetic acid stress.pdf by Yuqing Wang (110531)

“…The transcriptomic and metabolomic results showed the upregulation of stress-related genes, including proB (Glutamate 5-kinase), proA (Glutamate-5-semialdehyde dehydrogenase), GAD (Glutamate decarboxylase), and peroxidases, alongside the downregulation of PK (Pyruvate kinase), indicateing a complex response involving the regulation of amino acid biosynthesis, coumaric acid metabolism, starch and sucrose metabolism, and pyruvate metabolism. …”

Table 3_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.xlsx by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”

DNA Methylation Profiles of Airway Epithelial Cells and PBMCs from Healthy, Atopic and Asthmatic Children by Dorota Stefanowicz (137378)

“…In AECs derived from asthmatics compared to atopics, 8 differentially methylated sites were identified including CpGs in <em>STAT5A</em> and <em>CRIP1</em>. We demonstrate STAT5A gene expression is decreased whereas CRIP1 gene expression is elevated in the AECs from asthmatic compared to both healthy and atopic subjects.…”

Selective Loss of Early Differentiated, Highly Functional PD1^high CD4 T Cells with HIV Progression by Robert M. Paris (237340)

“…In line with our previous findings, PD-1^high EI CD4 T cells were also characterized by a high expression of CCR7, CXCR5 and CCR6, a phenotype associated with increased <i>in vitro</i> B cell help. …”

Data Sheet 1_Preparation of biosorbent from avocado seeds for preconcentration and simultaneous extraction of trace parabens in environmental wastewater samples.docx by Aluwani Sharon Nephiphidi (22696835)

“…The reusability and regeneration adsorption percentage recoveries significantly decreased after the fifth cycle. Parabens extraction using the 30% KOH- magnetic activated carbon was considered a capable biosorbent for the extraction of parabens because it demonstrated a strong potential for extracting parabens pollutants simultaneously in wastewater samples.…”

First serial correlation coefficient of the GIF model with respect to the correlated noise time constant <i>τ</i>_<i>η</i>. by Lukas Ramlow (11349500)

“…<p>Panel A shows the SCC for an adaptive GIF with parameters similar to those in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009261#pcbi.1009261.g005" target="_blank">Fig 5C</a>. …”

Data Sheet 1_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.pdf by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”

Perimetry measures and EEG. by Carolin Gall (411085)

“…Between-group comparisons were performed according to a pre-defined hypothesis using a one-sided U-test. …”

Image_1_Clinical predictive value of naïve and memory T cells in advanced NSCLC.tif by Guan Zhang (603136)

“…The percentage of CD4⁺ naïve T (Tn), CD8⁺ Tn, CD8⁺ T memory stem cell (Tscm), and CD8⁺ terminal effector T cell decreased obviously. Still, all AC of Tn/Tm of aNSCLCs was significantly lower compared to NCs. …”

Table 1_Transcriptomic and proteomic signatures of host NK cells delineate distinct immune states across tuberculosis infection statuses.xlsx by Han Zhang (110653)

“…In addition, RT-qPCR validation identified a four-biomarker combination (SLC7A5, PDE4D, CXCR4, and SOCS3) distinguishing ATB from HCs, a three-biomarker combination (SLC7A5, PER1, and PDE4D) differentiating LTBI from HC, and a three-biomarker combination (SOCS3, GZMK, and HIST1H3B) differentiating ATB from LTBI. …”