Ionizing radiation–induced DSBs and repair. by Jim Westmoreland (260234)

“…<p>Haploid cells growing logarithmically in YPDA media were arrested at G2/M with nocodazole and γ-irradiated with 5 to 80 krads from a Cs source. Cells from the 80 krad dose were returned to YPDA containing nocadazole and incubated for up to 4 hours to allow repair of DSBs (A) DSBs and repair in WT and <i>exo1Δ</i> strains. …”

Fitness reaction norms and experimental evolution design. by Thiago S. Guzella (5920229)

“…To address the role of genetic drift and founder effects in the loss of the best genotypes during slower rates of environmental change we perform a second set of evolution experiments, where 7 of the gradual populations at generation 35 are kept in constant high salt for an extra 30 generations (<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1007731#pgen.1007731.g007" target="_blank">Fig 7</a>).…”

Prophylactic Effect of Probiotics on the Development of Experimental Autoimmune Myasthenia Gravis by Chang-Suk Chae (109597)

“…Although protective role of probiotics have been reported in diverse diseases, no information is available whether probiotics can modulate neuromuscular immune disorders. We have recently demonstrated that IRT5 probiotics, a mixture of 5 probiotics, could suppress diverse experimental disorders in mice model. …”

Novel fluorinated surfactants for enhanced oil recovery in carbonate reservoirs by Al-Amodi, Adel O.

“…A decrease in oil/water interfacial tension (IFT) of almost one order of magnitude was observed when adding surfactant‐A. …”
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Effect of convergence criterion on overall solution accuracy. by Christian Schlinkmann (9585315)

“…The error continues to decrease as the convergence criterion is lowered, with a value of 0.46% using 1.0×10⁻⁷ and 0.15% using 1.0×10⁻⁹. …”

Dpr10 controls ORN wiring in the antennal lobe. by Scott Barish (845697)

“…<p>Mutation of <i>dpr10</i> causes disruption of DM3 (A, B), V (C, D) and DL1 (E, F) glomeruli but not the VA1v (G, H) glomerulus as visualized with OR reporters diving <i>syt</i>::<i>GFP</i> (green). …”

Relative expression of genes encoding proteins in the KEGG Insulin Signaling pathway. by Danielle G. Lemay (105771)

“…Color denotes change in gene expression from colostrum to transitional (Panel A) or transitional to mature (Panel B): red = significant increase, green = significant decrease, and yellow = no significant change in expression between stages; gray = no member of this gene family is expressed >0.5 FPKM during either stage being compared. …”

Comparison of <i>in vitro</i> and <i>in vivo</i> egg aging. by Anna Kosubek (239172)

“…<p>(A–C) Eggs were fertilized immediately, with a 3-hour delay (<i>in vitro</i>) or from a batch obtained 1.5 hours later (<i>in vivo</i>) from the same female shown also in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013532#pone-0013532-g003" target="_blank">Fig. 3</a> as exp. 8. …”

Impact of temperature on steady state population sizes. by Congbo Xie (761590)

“…The peaks of the population size of polyps and medusae occur at 12.5°C and 16.8°C, respectively. The high temperature is detrimental to the populations and leads to the decrease of population level.…”

DataSheet1_Synthesis and characterization of 3D-zeolite–modified TiO2-based photocatalyst with synergistic effect for elimination of organic pollutant in wastewater treatment.docx... by Na Liu (102929)

“…In addition, repetitive experiments demonstrated that the improved Rh B degradation efficiency of Z-PAgT-5 was well maintained even after five recycling runs without any obvious decrease. …”

Enhanced intrinsic excitability of spinal Calcrl⁺ neurons in chronic itch. by Huifeng Jiao (11537806)

“…<p><b>(A)</b> Representative step depolarization responses from Calcrl⁺ neurons in both group. …”

U-PB zircon tuff geochronology from the Karoo Basin, South Africa: implications of zircon recycling on stratigraphic age controls by Matthew P. McKay (692203)

Optimization of the effect of rISL1 protein on hESCs. by Hananeh Fonoudi (278175)

“…The percentage of beating clusters in the rISL1-treated group was significantly higher than the untreated group at day 14 after plating (75±10% vs. 20±2.5%). )* : P<0.05((F) rISL1 treatment resulted in a 3.2±0.5 fold increase in the number of beating areas in comparison with untreated control group. rISL1 also caused a 2.2±0.4 fold increase in the other hESC line, Royan H6, which shows the reproducibility of this protocol for another hESC line. )* : P<0.05((G) In order to assess the expression of cardiac-specific genes, we collected samples at 3 stages: day 3 after plating (the day of rISL1 removal); day 14 after plating (day of maximum beating); and day 20 after plating (day that beating decreased and cells were mature) by qRT-PCR in two hESC lines. …”

Molecular Evolution of Phosphoprotein Phosphatases in <em>Drosophila</em> by Márton Miskei (213668)

“…We demonstrated that all of these new PPP genes exhibit a distinct male specific expression. …”

Project Achilles Copy Number Paper by Robin Meyers (2819002)

“…</div><div><br></div><div><br></div><div><br></div><div>Analysis steps v3.3.8a:</div><div><br></div><div>1. QC and identify reps with reproducibility <0.8 or are outliers on PCA or fail FP</div><div>2. remove sgRNAs(guides) with low counts in DNA samples:</div><div>completely remove shRNAs with median <=1 </div><div>3. remove replicates that fail QC measures </div><div>4. fold change(FC) with DNA pool samples </div><div>5. zero-center median of negative controls</div><div>6. collapse replicates per line </div><div>7. sgRNAs are mapped to genes using(Achilles_v3.3.8a.gct)</div><div><br></div><div>Analysis steps v3.3.8:</div><div><br></div><div>1. …”

Tracking Membrane Protein Association in Model Membranes by Myriam Reffay (265498)

“…We extract a stoichiometry for the complex that exhibits a strong pH dependance: from 2 to 6 MexA per OprM trimer when the pH decreases from 7.5 to 5.5.…”

Hourly averages of O₂ flux and PAR on the RC and the RS. by Matthew H. Long (387725)

“…Hourly averages of daytime production over 7 and 5 d for the RC (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058581#pone-0058581-g006" target="_blank">Figure 6B</a>) and RS (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058581#pone-0058581-g006" target="_blank">Figure 6D</a>), respectively. …”

<i>loe</i> shows increased levels of p-cofilin. by Mandy Cook (308544)

“…<i>tsr^N96A</i>/+ flies show a decrease in total cofilin whereas LIMK overexpressing flies (note the higher load in this lane) and <i>loe</i> flies do not show a change in total cofilin levels. …”

Electricity system based on 100% renewable energy for India and SAARC by Ashish Gulagi (4258855)

“…The results obtained for a total system levelised cost of electricity (LCOE) showed a decrease from 71.6 €/MWh in a decentralized to 67.2 €/MWh for a centralized grid connected scenario. …”

Conformational fingerprint of mutant ACE. by Sergei M. Danilov (118956)

“…Samples were equilibrated according to 5 mU/ml of the ACE activity with Hip-His-Leu as a substrate and incubated with a wells on the microtiter plate covered by mAbs to ACE via goat-anti-mouse IgG; then precipitated ACE activity was quantified by fluorimetric assay - plate precipitation assay <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0025952#pone.0025952-Danilov4" target="_blank">[42]</a>. …”