Numbered positions represent nucleotide state variables (with position zero representing the edited/non-edited site) by Michael P Cummings (4769)

“…<p><b>Copyright information:</b></p><p>Taken from "Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA"</p><p>BMC Bioinformatics 2004;5():132-132.…”

Effect of root nodule number. by Hironori Fujita (226867)

“…Parameters are: <i>b</i> = 5.0, <i>b</i>  = 0.0, <i>c_N</i> = 0.4.…”

Splicing behaviour of pre-mRNA constructs with varying exon lengths by Oliver Mayer (9106)

“…The splicing reaction is induced by the addition of GTP, in the presence of 5 mM Mg at 37°C. The decrease in pre-mRNA versus time is indicated.…”

Anacardic acid inhibits the binding of HATs to the <i>Gata4</i> promoter. by Chang Peng (611040)

“…<p>Alcohol could improve binding of P300, PCAF, SRC1 and CBP to the <i>Gata4</i> promoter on E14.5, and anacardic acid could repress binding of P300 and PCAF to the <i>Gata4</i> promoter in cardiac tissues whereas anacardic acid could not decrease binding of SRC1 and CBP to the <i>Gata4</i> promoter in the same cardiac tissues (A,B,C,D). *: P<0.01 vs. control group (n = 3), ^##: P<0.05 vs. alcohol group (n = 3). **: P<0.01 vs. alcohol group (n = 3).…”

Different types of conditioned media affected the migration of EPCs and MSCs. by Si-yong Gao (4097623)

“…(b,d) Data analysis showed that conditioned media from preosteoclasts treated by zoledronate at 0.5 μM (PZ-CM 0.5μM) showed a significant decrease in the number of migrated cells compared with lower concentration and showed no difference with conditioned medium from macrophage (M-CM) or from preosteoclasts neutralized by PDGF-BB antibody (PA-CM).…”

PQ- or H₂O₂-mediated oxidative stress causes global metabolic changes. by Afzal Husain (131305)

“…<p>(<b>A–B</b>) Survival of <i>E. histolytica</i> trophozoites after 12 h of treatment with varying concentrations of PQ (<b>A</b>) or H₂O₂ (<b>B</b>). …”

Ten daily doses of ethanol exposure reduced neurogenesis in hippocampal dentate gyrus during combined ethanol and LPS treatments by Liya Qin (46555)

“…(A) Ethanol (5 g/kg, i.g., 1 day) pre-treated group, LPS did not show a decrease in the number of PCNA and doublecortin-IR cells. …”

TNF-alpha releasing capacity of the whole blood drops after open total splenectomy, but increases after partial/subtotal or minimally invasive splenectomy by Mihnea P. Dragomir (10728884)

Schematic diagram of the electrochemical detection protocol adopted in this study. by Amanda Giamberardino (484995)

Appendix bij Van Helvoirt en Geurts by Daniëlle van Helvoirt (12500953)

data_PONE-D-24-12069.csv by Darcy Visscher (19656031)

AR alters PML aggregation via p63 pathway. by Yelena Mirochnik (179447)

“…The number of PML bodies per cell was calculated as above (C, right). Note a robust decrease in PML staining upon p63 knock-down (day 3, P<0.05; day 5, P<0.0001). …”

Data Sheet 1_Integrative transcriptome and WGCNA analysis reveal key genes mainly in response to Alternaria alternata in Populus simonii × P. nigra.docx by Siyuan Liu (696701)

“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that these genes were mainly related to biological stress, signal transduction, cell wall, and photosynthesis. Within these modules, we also identified hub genes in the regulatory network, including GLK1/2 transcriptional activators, 14-3-3 proteins, cytosine 5 methyltransferases, and a variety of proteins associated with photosynthesis and respiration. …”

Table 1_Integrative transcriptome and WGCNA analysis reveal key genes mainly in response to Alternaria alternata in Populus simonii × P. nigra.xlsx by Siyuan Liu (696701)

“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that these genes were mainly related to biological stress, signal transduction, cell wall, and photosynthesis. Within these modules, we also identified hub genes in the regulatory network, including GLK1/2 transcriptional activators, 14-3-3 proteins, cytosine 5 methyltransferases, and a variety of proteins associated with photosynthesis and respiration. …”

FZC18 suppresses Wnt/β−catenin signaling and clonogenesis in cancer cells. by Delphine Quélard (43727)

“…Controls include SFRP1, SFRP5, V3Nter and V2Nter (250 ng cDNA). (B) Immunoblot of HCT116 cells transiently transfected with increasing amounts of FZC18 cDNA. …”

Baseline characteristics for pneumonia. by Mathias Aagaard Christensen (19139443)

“…</p><p>Results</p><p>Models were generated for atrial fibrillation, venous thromboembolism and pneumonia as genetics only, clinical features only and a combined model. For venous thromboembolism, the ROC-AUCs were 60.1% [59.6%-60.4%], 63.4% [63.2%-63.4%] and 66.6% [66.2%-66.9%] for the linear models and 51.5% [49.4%-53.4%], 63.2% [61.2%-65.0%] and 62.6% [60.7%-64.5%] for the deep learning SNP, clinical and combined models, respectively. …”

Ternary Potassium Single Cation Ionic Liquids Explored by Bayesian Optimization by Longjie Liu (21077295)

The expression of PGC-1α and mitochondrial alteration in Myc-ON mice. by Hyoung-gon Lee (73934)

“…Original magnification: X 400 for A and B, X 30,000 for C, D and E.</p>…”

Effect of atorvastatin on HMGB1 and IL-8 levels in HUVEC supernatants. by Alexandre W. S. de Souza (556095)

“…HMGB1 intensity in supernatants increases 8 hours after stimulation and a peak is observed at 24 hours with a decrease at 48 hours. 2B and C – HMGB1 and IL-8 levels are significantly higher at 24 hours in supernatants from HUVEC treated with LPS in comparison to unstimulated HUVEC while pre-incubation with 5 µM atorvastatin followed by LPS stimulation lowered HMGB1 and IL-8 levels significantly at 24 hours in HUVEC's supernatants. …”

Genome-wide screen controls and primary results. by Yolande Grobler (5959106)

“…(<b>B)</b> The whole genome screen yielded 1117 primary hits with a robust Z score of ≥1.5 or ≤-1.5. These genes included 329 genes that increase <i>Wolbachia</i> (magenta) and 788 genes that decrease <i>Wolbachia</i> (green) upon RNAi knockdown. …”