Table3_Integrated Transcriptome and Multiple Activated Pathways in Endometrial Cancer.XLSX by Qi Jin (12159)

“…The transcriptomic sequencing results showed 1153 DEGs, including 673 upregulated and 480 downregulated genes, in the EC specimens. Decreased expression of ID1, IGF1, GDF7, SMAD9, TGF-beta and WNT4, as well as GDF5, INHBA and ERBB4 overexpression, were confirmed in EC using RT-qPCR. …”

Table_4_Omics-Based Mechanistic Insight Into the Role of Bioengineered Nanoparticles for Biotic Stress Amelioration by Modulating Plant Metabolic Pathways.DOCX by Madhuree Kumari (3699274)

“…The particles reduced disease severity by 70–80% at 5 μg/ml without showing phytotoxicity. It elicited plant immunity by a significant reduction in reactive oxygen species (ROS), decreases in stress enzymes by 0.6–19.8-fold, and emergence of autophagy. …”

Table_1_Omics-Based Mechanistic Insight Into the Role of Bioengineered Nanoparticles for Biotic Stress Amelioration by Modulating Plant Metabolic Pathways.DOCX by Madhuree Kumari (3699274)

“…The particles reduced disease severity by 70–80% at 5 μg/ml without showing phytotoxicity. It elicited plant immunity by a significant reduction in reactive oxygen species (ROS), decreases in stress enzymes by 0.6–19.8-fold, and emergence of autophagy. …”

Quantitative comparison of differentially expressed transcripts and the biological responses that are significantly enriched in mast cells by AgNPs. by Monica Johnson (4993490)

“…Significance was set at <i>p</i>≤0.05 with a fold enrichment cutoff of ≥5. RTK, receptor tyrosine kinase; MAPK, mitogen-activated protein kinase.…”

Table2_Integrated Transcriptome and Multiple Activated Pathways in Endometrial Cancer.XLSX by Qi Jin (12159)

“…The transcriptomic sequencing results showed 1153 DEGs, including 673 upregulated and 480 downregulated genes, in the EC specimens. Decreased expression of ID1, IGF1, GDF7, SMAD9, TGF-beta and WNT4, as well as GDF5, INHBA and ERBB4 overexpression, were confirmed in EC using RT-qPCR. …”

Molecular Profiling Associated with Calcium/Calmodulin-Dependent Protein Kinase Kinase 2 (CAMKK2)-Mediated Carcinogenesis in Gastric Cancer by Mohd. Altaf Najar (10586881)

“…In addition, tandem mass tag (TMT)-based quantitative proteomic analysis resulted in the identification of 7609 proteins, of which 219 proteins were found to be overexpressed and 718 downregulated (1.5-fold). Our data identified several key downregulated proteins involved in cell division and cell proliferation, which included DNA replication licensing factors, replication factor C, origin recognition complex, replication protein A and GINS, and mesenchymal markers, upon CAMKK2 inhibition. …”

Ectopic <i>Lxn</i> expression increases apoptosis of A20 cells. by Yi Liu (36759)

“…A representative flow cytometric file from Day 5 of culture is shown. (<b>B</b>): Down-regulation of anti-apoptotic genes by <i>Lxn</i> overexpression. …”

Supplementary file 2_Impacts of Bacillus-based biotics and an enzyme cocktail on growth performance, immunity, and gut pathogenic microorganisms of nursery pigs under commercial co... by Seong-Min Koo (21788807)

“…Additionally, both B and D treatments decreased Mycoplasma spp. in the gut, as indicated by log fold change (LFC) values of −1.571 and −1.529, respectively.…”

Image_9_Genome Analysis Coupled With Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus laminosus UU774 Under Exogenous Nitrogen Supplement.JP... by Mayuri Mukherjee (11009623)

“…Among genes showing extreme downregulation when grown in a medium supplemented with nitrogen with the fold change > 5 are transcriptional regulator gene WalR, carbonic anhydrases, RNA Polymerase Sigma F factor, fimbrial protein, and twitching mobility protein. …”

Image_12_Genome Analysis Coupled With Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus laminosus UU774 Under Exogenous Nitrogen Supplement.T... by Mayuri Mukherjee (11009623)

“…Among genes showing extreme downregulation when grown in a medium supplemented with nitrogen with the fold change > 5 are transcriptional regulator gene WalR, carbonic anhydrases, RNA Polymerase Sigma F factor, fimbrial protein, and twitching mobility protein. …”

Table1_Integrated Transcriptome and Multiple Activated Pathways in Endometrial Cancer.XLSX by Qi Jin (12159)

“…The transcriptomic sequencing results showed 1153 DEGs, including 673 upregulated and 480 downregulated genes, in the EC specimens. Decreased expression of ID1, IGF1, GDF7, SMAD9, TGF-beta and WNT4, as well as GDF5, INHBA and ERBB4 overexpression, were confirmed in EC using RT-qPCR. …”

Image_4_Genome Analysis Coupled With Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus laminosus UU774 Under Exogenous Nitrogen Supplement.TI... by Mayuri Mukherjee (11009623)

“…Among genes showing extreme downregulation when grown in a medium supplemented with nitrogen with the fold change > 5 are transcriptional regulator gene WalR, carbonic anhydrases, RNA Polymerase Sigma F factor, fimbrial protein, and twitching mobility protein. …”

Induction of intracellular metabolic activators by sofosbuvir. by Yongyut Pewkliang (4799217)

“…These genes were increased in imHC (B) and were decreased in Huh7 (C) after treated with 0, 1, and 5 μM sofosbuvir. …”

Data_Sheet_1_Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae).PDF by Jamie McCann (3111606)

“…The investigated genomes range in size from 0.49 to 2.27 pg/1C (ca. 4.5-fold variation), despite having the same base chromosome number (x = 10) and very strong phylogenetic affinities. …”

Comparisons between simulated and experimental free-running period shifts <i>δτ</i> in different constant light conditions and genetic backgrounds for plant models AP2012 and AP201... by Mathias Foo (701966)

“…(S1.5) in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007671#pcbi.1007671.s001" target="_blank">S1 Text</a>). …”

Mice Chronically Fed High-Fat Diet Have Increased Mortality and Disturbed Immune Response in Sepsis by Louise Strandberg (257833)

“…Bacterial load in the kidneys 5–7 days after inoculation was increased 10-fold in HFD-fed compared with LFD-fed mice. …”

Deconvolution shows a strong effect of cell subtype proportions on gene expression variation in a study of blood leukocytes from asthmatics. by Yu Kong (487122)

“…In (d) we show two volcano plots, the upper showing 405 differentially-expressed genes (DEGs, FDR-adjusted p value <0.05, >1.2 fold change in expression) in red, representing those identified without cell subtype proportion adjustment. …”

Cold-Induced Changes in Gene Expression in Brown Adipose Tissue, White Adipose Tissue and Liver by Andrew M. Shore (435672)

“…Expression of 1895 genes were significantly (P<0.05) up- or down-regulated more than two fold by cold exposure in all tissues but only 5 of these genes were shared by all three tissues, and only 19, 14 and 134 genes were common between WAT and BAT, WAT and liver, and BAT and liver, respectively. …”

Image_7_Genome Analysis Coupled With Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus laminosus UU774 Under Exogenous Nitrogen Supplement.TI... by Mayuri Mukherjee (11009623)

“…Among genes showing extreme downregulation when grown in a medium supplemented with nitrogen with the fold change > 5 are transcriptional regulator gene WalR, carbonic anhydrases, RNA Polymerase Sigma F factor, fimbrial protein, and twitching mobility protein. …”

Data_Sheet_1_Omics-Based Mechanistic Insight Into the Role of Bioengineered Nanoparticles for Biotic Stress Amelioration by Modulating Plant Metabolic Pathways.pdf by Madhuree Kumari (3699274)

“…The particles reduced disease severity by 70–80% at 5 μg/ml without showing phytotoxicity. It elicited plant immunity by a significant reduction in reactive oxygen species (ROS), decreases in stress enzymes by 0.6–19.8-fold, and emergence of autophagy. …”