Parameter perturbations that make GAL network more inducible, more repressed, and bimodality insensitive. by Jiayin Hong (9732844)

“…When increasing kf83 by 2-fold, 10-fold, and 100-fold (reddish lines in the plot), a subpopulation of yeast cells show induction at lower galactose concentration, compared to the phenotype captured by default parameters (shown in cyan line). …”

Doxycycline induced gene expression changes associated with protein translation. by Timothy C. Saylor (13889287)

“…<p>(A) Fold change versus expression strength for all detectable genes after 3 or 24 hours doxycycline treatment compared to untreated controls. …”

Dimethylated Sulfur Species. by B. Jacob Kendrick (662898)

“…Total DMSP and DMSO accumulated more slowly in 18V than other treatments with a decrease in DMSO and DMSP beginning on days 2 and 3, respectively. …”

Daylength. by Mariana Abarca (6792434)

“…Black points indicate mean time to each of the five typical larval instars and to pupation (intercalary molts are not shown to improve clarity; development time of intercalary instar “3.5” is considered part of instar 3). …”

Mitoflashes are switched to lower ΔF/F₀ amplitude and R-type mitoflashes in dystrophin morphants. by Meiling Zhang (352540)

“…Data were reported as median with interquartile range at 1/4, 1/2 and 3/4 of the data, respectively (Fig 5A, E-G) and mean ± SEM (for Fig 5B-D). Unpaired t test with Welch’s correction (Fig 5A-D) and Mann-Whitney test (Fig 5E and G) was applied to determine statistical significance of the differences. **: p <0.01 versus wild-type group, ***: p <0.0001 versus wild-type group.…”

Differences in cell death estimation between flow cytometry and holographic microscopy. by Jan Balvan (710551)

“…<p><b>A.</b> Plumbagin treatment, no annexin V/PI staining, used for gating set-up. …”

PD173074 treatment results in reduced glial numbers at later stages. by Nicholas J. Gibson (173220)

“…<b>Blocking glial FGFR activation leads to a decrease in proliferation. </b><b>C,D:</b> Control and PD173074-treated animals were allowed to develop to late stage 5, then dissected and their brains labeled with an antibody to phospho-histone H3, an indicator of mitosis (yellow). …”

Semiparametric pairwise model outperforms other models. by Jan Humplik (4445659)

“…<b>D)</b> Average (across neurons) error rate decrease achieved by using a semiparametric pairwise model instead of a K-pairwise model for subpopulations of various sizes. …”

Supplementary Material for: Maternal Thinness and Obesity and Customized Fetal Weight Charts by GonzálezGonzález N.L. (11288730)

“…<b><i>Conclusion:</i></b> The use of CC_(18.5–25) allows a more accurate identification of LGA and SGA infants at risk of perinatal morbidity than conventional CC. …”

101 flagellate phylogenomics data by Guifré Torruella (3846172)

“…On average, 7.2% of completeness decreased after cleaning the data from non-eukaryotic contaminants, which might represent a loss of truly eukaryotic peptides due to the limited taxon sampling of the BAUVdb (Table S2 and S4). …”

Supplementary Fig. 2 from Pancreatic Cancer–Derived Exosomes Cause Paraneoplastic β-cell Dysfunction by Naureen Javeed (14999325)

Heat- and acid-resistant endotoxin neutralization (HAREN). by Keith Champion (425578)

“…The <i>p</i> value indicates the statistical difference compared with the control group as determined using Student’s t-test. (A) In males, HAREN is increased from 5.1 ± 2.0% in controls to 18.0 ± 2.9% (<i>p</i> = 0.00171) in UC and 24.0 ± 2.8% (<i>p</i> = 0.00004) in CD. …”

Hemodynamics and pathology of an enlarging abdominal aortic aneurysm model in rabbits by Hongmei Chen (7809)

“…Matrix metalloproteinase 2 expression decreased significantly in Group B at week 15 compared with week 5 and Group A. …”

Temperature-course effect of heat exposure (37°C – 43°C) for 1 h on TJ protein expression in Caco-2 monolayers. by Guizhen Xiao (459228)

“…<b>C</b>: The exposure to heat produced a progressive decrease in ZO-1 protein expression. …”

Project Achilles Copy Number Paper by Robin Meyers (2819002)

“…</div><div><br></div><div><br></div><div><br></div><div>Analysis steps v3.3.8a:</div><div><br></div><div>1. QC and identify reps with reproducibility <0.8 or are outliers on PCA or fail FP</div><div>2. remove sgRNAs(guides) with low counts in DNA samples:</div><div>completely remove shRNAs with median <=1 </div><div>3. remove replicates that fail QC measures </div><div>4. fold change(FC) with DNA pool samples </div><div>5. zero-center median of negative controls</div><div>6. collapse replicates per line </div><div>7. sgRNAs are mapped to genes using(Achilles_v3.3.8a.gct)</div><div><br></div><div>Analysis steps v3.3.8:</div><div><br></div><div>1. …”

Effect of Mediator disruption on euchromatic genes. by Eriko Oya (446107)

“…<p>Venn diagram showing the number of transcripts whose expression levels are increased (up) or decreased (down) >1.5-fold in mutants compared to the wild-type. …”

Performance of RFECS for enhancer predictions in H1 and IMR90 cells. by Nisha Rajagopal (389555)

“…<p>Area under the 5-fold cross-validated ROC curve decreases with increase in number of trees stabilizing gradually in A.)H1 and B.)IMR90 cells. …”

Spf1 affects the cellular distribution of Mn²⁺. by Yifat Cohen (504564)

“…By looking at the fold change of ion concentration of Δ<i>spf1</i> or OE-Spf1 microsomes relative to WT it can be seen that Mn²⁺ is the only ion that decreases in Δ<i>spf1</i> and increases in microsomes of OE-Spf1. …”

Causal learning model. by Sang Wan Lee (731020)

“…<p>(A) Causal uncertainty model. The causal relationship between a stimulus (S1 or S2) and an outcome (O) can be encapsulated as a probability distribution, of which a mean and a variance are referred to as a “causal strength” and a “causal uncertainty,” respectively. …”

Contrasting transcriptomes of somatic, OSKM transduced HFF1 and pluripotent cell types. by Nancy Mah (105583)

“…The normalized expression values (z-score) of 6179 transcripts (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0024351#pone.0024351.s007" target="_blank">Data S1</a>) regulated at any timepoint or in iPS/ES cells with respect to HFF1 cells (p_adj<0.05; fold change >1.5) are shown. …”