Anti-inflammatory effects and beneficial effects of the feed additive <i>Urtica cannabina</i> L. in zebrafish by Wu Dong (1376829)

SUD Raw data.zip by Xiaoding Zhang (17976626)

Comparison of transcriptional profiles of <i>Tlr2</i>^-/- and wild-type microglia during <i>T</i>. <i>gondii</i> infection. by Kousuke Umeda (4592041)

“…<p>Upregulated (A, C, E) and downregulated (B, D, F) genes were identified as genes with 2-fold change and < 0.05 FDR in DESeq analysis comparing infected and uninfected cells. …”

Comparison of transcriptional profiles of <i>Tlr2</i>^-/- and wild-type neurons during <i>T</i>. <i>gondii</i> infection. by Kousuke Umeda (4592041)

“…<p>Upregulated (A, C, E) and downregulated (B, D, F) genes were identified as genes with 2-fold change and < 0.05 FDR in DESeq analysis comparing infected and uninfected cells. …”

Measurement of ROS level. by Abul Hasan Sardar (573177)

“…The promastigotes were first treated with menadione and incubated with H₂DCFDA for the estimation of ROS level. A) The ROS level was found to be decreased by ~1.9 fold in OE cells whereas increased by 1.8 fold in LdASS down regulated cells (<i>LdASS</i>^<i>-/-/+</i>) compared to WT cells. …”

Could Vagus nerve stimulation influence bone remodeling? by Tamimi, Ahmad

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Selective Enrichment of Cysteine-Containing Phosphopeptides for Subphosphoproteome Analysis by Mingming Dong (1471396)

“…Interestingly, amino acid residues surrounding the identified phosphosites were enriched with buried residues (L, V, A, C) while depleted with exposed residues (D, E, R, K). …”

Measurement of mitochondrial function in nasal fibroblasts with and without TGF-β1 or with and without PX-478 To investigate whether mitochondrial function are elevated by TGF-β1,... by Min-Sik Jo (14636809)

“…<p>Oxygen consumption rate (OCR) was significantly increased at 5 ng/ml TGF-β1 (S1A Fig). To determined whether PX-478 decrease mitochondrial function, PX-478 (20 nM) was pretreated for 1 hour, followed by TGF-β1 48 hours. …”

DataSheet_2_Molecular characterization of cross-kingdom RNA interference in Botrytis cinerea by tomato small RNAs.xlsx by Si Qin (3627863)

“…In order to study the functionality of this plant sRNA in reducing the Bcspl1 transcript level, we generated a fungal mutant that contained a 5-nucleotide substitution that would abolish the interaction between the transcript and the sRNA without changing the encoded protein sequence. …”

Modelling of the effects of En1 and En2 on hippocampal cells. by Asma Soltani (4356841)

“…In normal conditions (black lines), low levels of endogenous secreted En1 (from GABA cell for instance) could participate to dendritogenesis (1), spinogenesis (2) (insert), and mTOR signaling (3) in neighbor glutamatergic neurons. In a pathological context, such as autism (red lines), a rise of En2 expression and secretion would generate additional effects, i.e. the increase in dendritic complexity of GABA cells (4), a decrease of clustered PSD95 (5), and the mispairing of glutamatergic synapses (6) (insert). …”

cGMP-Dependent Protein Kinase Type I Is Implicated in the Regulation of the Timing and Quality of Sleep and Wakefulness by Sonja Langmesser (57421)

“…Moreover, PRKG1 deficiency results in an aberrant pattern, and consequently a reduced quality, of sleep and wakefulness, possibly due to a decreased wake-promoting output of the circadian system impinging upon sleep.…”

Altered Cerebrospinal Fluid Proteins in Smith–Lemli–Opitz Syndrome by Wenping Li (440398)

Olfactory Bulb Glomerular NMDA Receptors Mediate Olfactory Nerve Potentiation and Odor Preference Learning in the Neonate Rat by Rebecca Lethbridge (173780)

“…<em>Ex vivo</em> experiments using bulbs from trained rat pups reveal an increase in the AMPA/NMDA EPSC ratio post-training, consistent with an increase in AMPA receptor insertion and/or the decrease in NMDAR subunits. These results support a model of a cAMP/NMDA interaction in generating rat pup odor preference learning.…”

Creating an amplifier of weak selection for death-Birth updating. by Benjamin Allen (408337)

“…We solve for remeeting times according to Eqs <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007529#pcbi.1007529.e014" target="_blank">(5)</a> and <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1007529#pcbi.1007529.e015" target="_blank">(6)</a>, and identify the vertex with the largest remeeting time (<i>τ</i>_<i>i</i> ≈ 18.29, shown in magenta). …”

Use of 2-Aminopurine Fluorescence To Examine Conformational Changes during Nucleotide Incorporation by DNA Polymerase I (Klenow Fragment)^† by Vandana Purohit (2947848)

“…Finally, when the primer had a 3‘-OH, a fluorescence decrease with a rate equal to the rate of nucleotide incorporation was observed with both 0 and +1 position reporters. …”

Association between Regulator of G Protein Signaling 9–2 and Body Weight by Jeffrey L. Waugh (194865)

“…We identified a naturally occurring 5 nucleotide deletion polymorphism in the human <em>RGS9</em> gene and found that the mean body mass index (BMI) of individuals with the deletion was significantly higher than those without. …”

An immunohistochemically stained photomicrograph of the stomach mucosa using an anti-TLR4 antibody. by Rehab F. Taher (20478600)

“…<p>(a) few TLR4-positively stained cells in the normal group; (b) the control ethanol group showed elevated TLR4 expression and a higher proportion of positive cells having deep brown coloring, (c) Omeprazole group showed reduction in the percentage of TLR4 positive cells with strong brown coloring, (d) PM-EtOH (25 mg/kg) group showed lowered percentage of TLR4 positive cells with weak cytoplasmic staining, (e) PM-EtOH (5o mg/kg) group showed decreased percentage of TLR4 positive cells, (f) PM-EtOH (100 mg/kg) group giving weak TLR4 expression, with a significant decrease in TLR4-positively stained cells(TLR4 immunohistochemical staining; Scale bar=100µm).…”

An Inducible Cell-Cell Fusion System with Integrated Ability to Measure the Efficiency and Specificity of HIV-1 Entry Inhibitors by Alon Herschhorn (198447)

“…Target cells express the HIV-1 receptors, CD4 and CCR5, and carry the firefly luciferase (F-Luc) reporter gene under the control of a tTA-responsive promoter. …”

Circular Dichroism analysis, PPIase activity and nickel regulation of <i>H</i>. <i>pylori</i> WT and mutant SlyD proteins. by Milica Denic (9987685)

“…<p><b>A.</b> Circular Dichroism spectra of SlyD wild type and mutant proteins were analyzed in 5 mM phosphate buffer (pH = 7.6). …”

Altered Cerebrospinal Fluid Proteins in Smith–Lemli–Opitz Syndrome by Wenping Li (440398)